RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 UBR4Q5T4S7 5183 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PDCD11Q14690 1871 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 NPHP3-ACAD11A0A0J9YXS1 232 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 MTSS1O43312 755 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 TRIM13O60858 407 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 SHOX2O60902 331 aaPredicted RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 VPS4BO75351 444 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 ZRANB2O95218 330 aaKnown RBP eCLIP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 C4BPAP04003 597 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PRKCGP05129 697 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 IFIT2P09913 472 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 NBPF7P0C2Y1 421 aaPredicted RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 STAG3L1P0CL83 205 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PDE6AP16499 860 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 NAT1P18440 290 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 LPOP22079 712 aaPredicted RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PRDX5P30044 214 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 RECQLP46063 649 aaPredicted RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 POLGP54098 1239 aaPredicted RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 JAM2P57087 298 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 SESN3P58005 492 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 OCRLQ01968 901 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PLP2Q04941 152 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 HNRNPA0Q13151 305 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 ZNF267Q14586 743 aaPredicted RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 RAB3GAP1Q15042 981 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 ACAP2Q15057 778 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 MINDY4Q4G0A6 757 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 C4orf46Q504U0 113 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 ARHGAP29Q52LW3 1261 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 FYB2Q5VWT5 728 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 E4F1Q66K89 784 aaPredicted RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 CAPRIN2Q6IMN6 1127 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 ZPBP2Q6X784 338 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 SYT12Q8IV01 421 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 ANKRD35Q8N283 1001 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PLD6Q8N2A8 252 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 MFSD4AQ8N468 514 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 VPS37AQ8NEZ2 397 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PARD3BQ8TEW8 1205 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 SMG7Q92540 1137 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PHACTR3Q96KR7 559 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 TTPALQ9BTX7 342 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 CDADC1Q9BWV3 514 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 JAM3Q9BX67 310 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PCGF6Q9BYE7 350 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 DPH1Q9BZG8 443 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 SLC13A1Q9BZW2 595 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 SMURF1Q9HCE7 757 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 CASS4Q9NQ75 786 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 TMEM74BQ9NUR3 256 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 PI4KBQ9UBF8 816 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 SAP30BPQ9UHR5 308 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 INTUQ9ULD6 942 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 VPS4AQ9UN37 437 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 SLC8A2Q9UPR5 921 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 CTNND2Q9UQB3 1225 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 ANKRD6Q9Y2G4 727 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 DAAM1Q9Y4D1 1078 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 CAPN6Q9Y6Q1 641 aa3.76□□□□□ -1.81
CPNE3-204ENST00000517862 SONP18583 2426 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 TNRC6BQ9UPQ9 1833 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 EPPK1P58107 5090 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 HELZP42694 1942 aaKnown RBP3.76□□□□□ -1.81
CPNE3-204ENST00000517862 ZNF469Q96JG9 3925 aaPredicted RBP3.75□□□□□ -1.81
CPNE3-204ENST00000517862 PCDH15Q96QU1 1955 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 ANKRD18BA2A2Z9 1011 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 OTOL1A6NHN0 477 aaPredicted RBP3.75□□□□□ -1.81
CPNE3-204ENST00000517862 ASB14A6NK59 587 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 GOLGA8AA7E2F4 631 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 GOLGA8BA8MQT2 603 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 DVL2O14641 736 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 N4BP3O15049 544 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 GRID2O43424 1007 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 PPFIA4O75335 1185 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 ZNF205O95201 554 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 LTFP02788 710 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 COL6A2P12110 1019 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 TRIM27P14373 513 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 PAMP19021 973 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 CCNE1P24864 410 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 FPR2P25090 351 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 SERPINB3P29508 390 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 BCL6P41182 706 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 HDAC4P56524 1084 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 MYO1EQ12965 1108 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 TARDBPQ13148 414 aaKnown RBP eCLIP3.75□□□□□ -1.81
CPNE3-204ENST00000517862 DHX8Q14562 1220 aaKnown RBP3.75□□□□□ -1.81
CPNE3-204ENST00000517862 TERF2Q15554 542 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 COBLL1Q53SF7 1204 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 CAVIN4Q5BKX8 364 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 CDKAL1Q5VV42 579 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 TMEM198Q66K66 360 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 CPZQ66K79 652 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 RCSD1Q6JBY9 416 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 CYP26C1Q6V0L0 522 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 FAM214BQ7L5A3 538 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 ATG9AQ7Z3C6 839 aa3.75□□□□□ -1.81
CPNE3-204ENST00000517862 GDF7Q7Z4P5 450 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms