RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 AEBP2Q6ZN18 517 aaPredicted RBP18.77■□□□□ 0.6
CPNE3-204ENST00000517862 CHIC1Q5VXU3 224 aa17.7■□□□□ 0.42
CPNE3-204ENST00000517862 SENP3Q9H4L4 574 aaPredicted RBP16.34■□□□□ 0.21
CPNE3-204ENST00000517862 POTEDQ86YR6 584 aa16.32■□□□□ 0.2
CPNE3-204ENST00000517862 PHF23Q9BUL5 403 aaPredicted RBP15.9■□□□□ 0.14
CPNE3-204ENST00000517862 FOXD1Q16676 465 aa15.27■□□□□ 0.04
CPNE3-204ENST00000517862 MSH5O43196 834 aa14.84□□□□□ -0.03
CPNE3-204ENST00000517862 PIAS4Q8N2W9 510 aaPredicted RBP14.08□□□□□ -0.16
CPNE3-204ENST00000517862 CACNB1Q02641 598 aaPredicted RBP13.43□□□□□ -0.26
CPNE3-204ENST00000517862 PPP6R1Q9UPN7 881 aa13.35□□□□□ -0.27
CPNE3-204ENST00000517862 ADRA2BP18089 450 aa13.29□□□□□ -0.28
CPNE3-204ENST00000517862 PLPPR3Q6T4P5 718 aa12.98□□□□□ -0.33
CPNE3-204ENST00000517862 DMRT2Q9Y5R5 561 aa12.72□□□□□ -0.37
CPNE3-204ENST00000517862 POTEHQ6S545 545 aa12.61□□□□□ -0.39
CPNE3-204ENST00000517862 MAPK8IP2Q13387 824 aaPredicted RBP12.52□□□□□ -0.41
CPNE3-204ENST00000517862 RNF39Q9H2S5 420 aa12.48□□□□□ -0.41
CPNE3-204ENST00000517862 DCAF8L1A6NGE4 600 aa12.37□□□□□ -0.43
CPNE3-204ENST00000517862 SCAF1Q9H7N4 1312 aaKnown RBP12.32□□□□□ -0.44
CPNE3-204ENST00000517862 C1QBPQ07021 282 aaKnown RBP12.29□□□□□ -0.44
CPNE3-204ENST00000517862 HOXD11P31277 338 aaPredicted RBP11.8□□□□□ -0.52
CPNE3-204ENST00000517862 DNAJC5BQ9UF47 199 aa11.65□□□□□ -0.54
CPNE3-204ENST00000517862 RNF216Q9NWF9 866 aaPredicted RBP11.45□□□□□ -0.58
CPNE3-204ENST00000517862 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.33□□□□□ -0.6
CPNE3-204ENST00000517862 DSG3P32926 999 aa11.31□□□□□ -0.6
CPNE3-204ENST00000517862 SP7Q8TDD2 431 aaPredicted RBP11.29□□□□□ -0.6
CPNE3-204ENST00000517862 CNKSR2Q8WXI2 1034 aa11.28□□□□□ -0.6
CPNE3-204ENST00000517862 CAPN15O75808 1086 aa11.19□□□□□ -0.62
CPNE3-204ENST00000517862 PPP4R3CPQ6ZMV5 832 aa11.19□□□□□ -0.62
CPNE3-204ENST00000517862 CHRDL2Q6WN34 429 aa11.08□□□□□ -0.64
CPNE3-204ENST00000517862 SPINK5Q9NQ38 1064 aaPredicted RBP11.05□□□□□ -0.64
CPNE3-204ENST00000517862 RBM42Q9BTD8 480 aaKnown RBP10.94□□□□□ -0.66
CPNE3-204ENST00000517862 PLSCR2Q9NRY7 297 aa10.93□□□□□ -0.66
CPNE3-204ENST00000517862 U3KPZ7 1027 aaPredicted RBP10.87□□□□□ -0.67
CPNE3-204ENST00000517862 ABCB7O75027 752 aa10.78□□□□□ -0.68
CPNE3-204ENST00000517862 HAX1O00165 279 aa10.73□□□□□ -0.69
CPNE3-204ENST00000517862 TRHP20396 242 aaPredicted RBP10.72□□□□□ -0.69
CPNE3-204ENST00000517862 ZNF219Q9P2Y4 722 aaPredicted RBP10.69□□□□□ -0.7
CPNE3-204ENST00000517862 APLP2Q06481 763 aa10.64□□□□□ -0.71
CPNE3-204ENST00000517862 LHX8Q68G74 356 aa10.58□□□□□ -0.72
CPNE3-204ENST00000517862 PIP4P2Q8N4L2 257 aa10.53□□□□□ -0.72
CPNE3-204ENST00000517862 NCBP3Q53F19 620 aaKnown RBP10.51□□□□□ -0.73
CPNE3-204ENST00000517862 AKT1S1Q96B36 256 aa10.38□□□□□ -0.75
CPNE3-204ENST00000517862 EVX2Q03828 476 aa10.35□□□□□ -0.75
CPNE3-204ENST00000517862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.31□□□□□ -0.76
CPNE3-204ENST00000517862 HNRNPUL2Q1KMD3 747 aaKnown RBP10.31□□□□□ -0.76
CPNE3-204ENST00000517862 FXR2P51116 673 aaKnown RBP eCLIP10.28□□□□□ -0.76
CPNE3-204ENST00000517862 REM2Q8IYK8 340 aaPredicted RBP10.25□□□□□ -0.77
CPNE3-204ENST00000517862 NPM3O75607 178 aaKnown RBP10.24□□□□□ -0.77
CPNE3-204ENST00000517862 PITPNM1O00562 1244 aa10.16□□□□□ -0.78
CPNE3-204ENST00000517862 SAMD1Q6SPF0 538 aaPredicted RBP10.16□□□□□ -0.78
CPNE3-204ENST00000517862 GABBR2O75899 941 aa10.14□□□□□ -0.79
CPNE3-204ENST00000517862 POLA2Q14181 598 aa10.14□□□□□ -0.79
CPNE3-204ENST00000517862 DNAJC5Q9H3Z4 198 aa10.07□□□□□ -0.8
CPNE3-204ENST00000517862 POTEMA6NI47 508 aa10.04□□□□□ -0.8
CPNE3-204ENST00000517862 SLC4A2P04920 1241 aa10.03□□□□□ -0.8
CPNE3-204ENST00000517862 C19orf67A6NJJ6 358 aa10□□□□□ -0.81
CPNE3-204ENST00000517862 PCDH10Q9P2E7 1040 aa9.98□□□□□ -0.81
CPNE3-204ENST00000517862 POTEGQ6S5H5 508 aa9.96□□□□□ -0.82
CPNE3-204ENST00000517862 ZBTB12Q9Y330 459 aaPredicted RBP9.94□□□□□ -0.82
CPNE3-204ENST00000517862 PRKAR2AP13861 404 aaKnown RBP9.92□□□□□ -0.82
CPNE3-204ENST00000517862 OSCARQ8IYS5 282 aa9.86□□□□□ -0.83
CPNE3-204ENST00000517862 POTEIP0CG38 1075 aa9.84□□□□□ -0.83
CPNE3-204ENST00000517862 OTUD5Q96G74 571 aa9.74□□□□□ -0.85
CPNE3-204ENST00000517862 DCBLD2Q96PD2 775 aa9.73□□□□□ -0.85
CPNE3-204ENST00000517862 CLCN6P51797 869 aa9.69□□□□□ -0.86
CPNE3-204ENST00000517862 CLEC11AQ9Y240 323 aa9.67□□□□□ -0.86
CPNE3-204ENST00000517862 SPDYE1Q8NFV5 336 aaPredicted RBP9.61□□□□□ -0.87
CPNE3-204ENST00000517862 MYCNP04198 464 aaPredicted RBP9.57□□□□□ -0.88
CPNE3-204ENST00000517862 CD44P16070 742 aaKnown RBP9.55□□□□□ -0.88
CPNE3-204ENST00000517862 CHADLQ6NUI6 762 aa9.53□□□□□ -0.88
CPNE3-204ENST00000517862 ABCC9O60706 1549 aa9.51□□□□□ -0.89
CPNE3-204ENST00000517862 SPDYE2BA6NHP3 402 aa9.49□□□□□ -0.89
CPNE3-204ENST00000517862 POTEB2H3BUK9 544 aa9.49□□□□□ -0.89
CPNE3-204ENST00000517862 SPDYE6P0CI01 402 aa9.49□□□□□ -0.89
CPNE3-204ENST00000517862 SPDYE2Q495Y8 402 aa9.49□□□□□ -0.89
CPNE3-204ENST00000517862 FAM163AQ96GL9 167 aaPredicted RBP9.42□□□□□ -0.9
CPNE3-204ENST00000517862 LCE2DQ5TA82 110 aaPredicted RBP9.38□□□□□ -0.91
CPNE3-204ENST00000517862 CDAN1Q8IWY9 1227 aa9.35□□□□□ -0.91
CPNE3-204ENST00000517862 PRR29P0C7W0 189 aa9.34□□□□□ -0.91
CPNE3-204ENST00000517862 MAMSTRQ6ZN01 415 aa9.34□□□□□ -0.91
CPNE3-204ENST00000517862 ZNF579Q8NAF0 562 aaKnown RBP9.32□□□□□ -0.92
CPNE3-204ENST00000517862 ATF5Q9Y2D1 282 aaPredicted RBP9.32□□□□□ -0.92
CPNE3-204ENST00000517862 FARP1Q9Y4F1 1045 aaPredicted RBP9.29□□□□□ -0.92
CPNE3-204ENST00000517862 GALR2O43603 387 aaPredicted RBP9.26□□□□□ -0.93
CPNE3-204ENST00000517862 ZRANB1Q9UGI0 708 aa9.24□□□□□ -0.93
CPNE3-204ENST00000517862 MMRN1Q13201 1228 aa9.23□□□□□ -0.93
CPNE3-204ENST00000517862 SCUBE2Q9NQ36 999 aa9.23□□□□□ -0.93
CPNE3-204ENST00000517862 FBLN2P98095 1184 aa9.21□□□□□ -0.94
CPNE3-204ENST00000517862 TRIM41Q8WV44 630 aa9.19□□□□□ -0.94
CPNE3-204ENST00000517862 ZNF692Q9BU19 519 aaPredicted RBP9.19□□□□□ -0.94
CPNE3-204ENST00000517862 METRNQ9UJH8 293 aa9.18□□□□□ -0.94
CPNE3-204ENST00000517862 SSUH2Q9Y2M2 353 aa9.17□□□□□ -0.94
CPNE3-204ENST00000517862 POTEJP0CG39 1038 aa9.15□□□□□ -0.94
CPNE3-204ENST00000517862 PELP1Q8IZL8 1130 aaKnown RBP9.13□□□□□ -0.95
CPNE3-204ENST00000517862 C7P10643 843 aa9.12□□□□□ -0.95
CPNE3-204ENST00000517862 SPNS2Q8IVW8 549 aa9.12□□□□□ -0.95
CPNE3-204ENST00000517862 SLC39A7Q92504 469 aa9.12□□□□□ -0.95
CPNE3-204ENST00000517862 KCNA4P22459 653 aa9.02□□□□□ -0.97
CPNE3-204ENST00000517862 PAK3O75914 559 aaPredicted RBP9.01□□□□□ -0.97
CPNE3-204ENST00000517862 ASTLQ6HA08 431 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms