RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 LIN52Q52LA3 116 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 FAM91A1Q658Y4 838 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 POLNQ7Z5Q5 900 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 B4GALNT2Q8NHY0 566 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 DEPTORQ8TB45 409 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 EZH1Q92800 747 aaPredicted RBP19.17■□□□□ 0.66
CCDC3-201ENST00000378825 C7orf26Q96N11 449 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 NR1H4Q96RI1 486 aaPredicted RBP19.17■□□□□ 0.66
CCDC3-201ENST00000378825 GPATCH2LQ9NWQ4 482 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 SIRPGQ9P1W8 387 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 PACSIN3Q9UKS6 424 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 APOC4-APOC2K7ER74 178 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 VWA5AO00534 786 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 KLF11O14901 512 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 ZMPSTE24O75844 475 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 APOC2P02655 101 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 PEX2P28328 305 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 OSTNP61366 133 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 DLG1Q12959 904 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 GSTA3Q16772 222 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 RSPH3Q86UC2 560 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 NDUFAF2Q8N183 169 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 POPDC2Q9HBU9 364 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 ZC3H7BQ9UGR2 993 aaKnown RBP19.17■□□□□ 0.66
CCDC3-201ENST00000378825 PPME1Q9Y570 386 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 NR2E3Q9Y5X4 410 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 PSME4Q14997 1843 aa19.17■□□□□ 0.66
CCDC3-201ENST00000378825 H7C0C1 242 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 SNRPAP09012 282 aaKnown RBP19.16■□□□□ 0.66
CCDC3-201ENST00000378825 CD1EP15812 388 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 CCNFP41002 786 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 ATP5OP48047 213 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 ROR1Q01973 937 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 SP2Q02086 613 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 CAND1Q86VP6 1230 aaKnown RBP19.16■□□□□ 0.66
CCDC3-201ENST00000378825 VSIG10LQ86VR7 867 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 RASSF3Q86WH2 238 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 SLC26A7Q8TE54 656 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 PIWIL1Q96J94 861 aaKnown RBP19.16■□□□□ 0.66
CCDC3-201ENST00000378825 WWP1Q9H0M0 922 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 HMGXB4Q9UGU5 601 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 GJA3Q9Y6H8 435 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 ADGRA2Q96PE1 1338 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 TOM1L1O75674 476 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 GRAP2O75791 330 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 ATG7O95352 703 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 APRTP07741 180 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 GRIA1P42261 906 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 CDK7P50613 346 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 TAZQ16635 292 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 CDO1Q16878 200 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 NDNQ99608 321 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 JPH1Q9HDC5 661 aaPredicted RBP19.16■□□□□ 0.66
CCDC3-201ENST00000378825 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.16■□□□□ 0.66
CCDC3-201ENST00000378825 HEY1Q9Y5J3 304 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 E2F8A0AVK6 867 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 OPHN1O60890 802 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 LSM8O95777 96 aaKnown RBP19.16■□□□□ 0.66
CCDC3-201ENST00000378825 KRT7P08729 469 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 TFAMQ00059 246 aaKnown RBP19.16■□□□□ 0.66
CCDC3-201ENST00000378825 C15orf59Q2T9L4 293 aaPredicted RBP19.16■□□□□ 0.66
CCDC3-201ENST00000378825 VWA5B1Q5TIE3 1220 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 DPH6Q7L8W6 267 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 ADGRF2Q8IZF7 708 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 TTC13Q8NBP0 860 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 OR6Y1Q8NGX8 325 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 TCHPQ9BT92 498 aa19.16■□□□□ 0.66
CCDC3-201ENST00000378825 KCNN4O15554 427 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 CDH6P55285 790 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 HADHQ16836 314 aaKnown RBP19.15■□□□□ 0.66
CCDC3-201ENST00000378825 SNRNP48Q6IEG0 339 aaKnown RBP19.15■□□□□ 0.66
CCDC3-201ENST00000378825 TRNP1Q6NT89 227 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 CRLF3Q8IUI8 442 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 S100A14Q9HCY8 104 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 PIH1D1Q9NWS0 290 aaKnown RBP19.15■□□□□ 0.66
CCDC3-201ENST00000378825 IRAK4Q9NWZ3 460 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 USP18Q9UMW8 372 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 PEX10O60683 326 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 IL1BP01584 269 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 PSAPP07602 524 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 KCNA4P22459 653 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 ADORA2AP29274 412 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 HMGCS2P54868 508 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 RPL10AP62906 217 aaKnown RBP19.15■□□□□ 0.66
CCDC3-201ENST00000378825 ASPHQ12797 758 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 TCHHL1Q5QJ38 904 aaPredicted RBP19.15■□□□□ 0.66
CCDC3-201ENST00000378825 DPY19L2Q6NUT2 758 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 SATL1Q86VE3 508 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 TWNKQ96RR1 684 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 NIF3L1Q9GZT8 377 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 FAM192AQ9GZU8 254 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 USP29Q9HBJ7 922 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 HACL1Q9UJ83 578 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 PCDHGB4Q9UN71 923 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 PCDHGB5Q9Y5G0 923 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 MAD1L1Q9Y6D9 718 aa19.15■□□□□ 0.66
CCDC3-201ENST00000378825 TNS1Q9HBL0 1735 aaKnown RBP19.14■□□□□ 0.65
CCDC3-201ENST00000378825 SDR42E2A6NKP2 422 aa19.14■□□□□ 0.65
CCDC3-201ENST00000378825 KRT37O76014 449 aa19.14■□□□□ 0.65
CCDC3-201ENST00000378825 RBL1P28749 1068 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms