RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 ZMYND8Q9ULU4 1186 aaPredicted RBP13.84□□□□□ -0.19
VRK3-205ENST00000593919 GREB1Q4ZG55 1949 aa13.84□□□□□ -0.19
VRK3-205ENST00000593919 CHD9Q3L8U1 2897 aa13.84□□□□□ -0.19
VRK3-205ENST00000593919 TBC1D4O60343 1298 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 LRCH4O75427 683 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 PYGMP11217 842 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 LAG3P18627 525 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 GJC1P36383 396 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 MRPS5P82675 430 aaKnown RBP13.83□□□□□ -0.19
VRK3-205ENST00000593919 NFE2Q16621 373 aaPredicted RBP13.83□□□□□ -0.19
VRK3-205ENST00000593919 KCTD19Q17RG1 926 aaPredicted RBP13.83□□□□□ -0.19
VRK3-205ENST00000593919 C15orf59Q2T9L4 293 aaPredicted RBP13.83□□□□□ -0.19
VRK3-205ENST00000593919 ADAT2Q7Z6V5 191 aaKnown RBP13.83□□□□□ -0.19
VRK3-205ENST00000593919 RHOT1Q8IXI2 618 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 ARFGAP1Q8N6T3 406 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 TMEM169Q96HH4 297 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 FUBP3Q96I24 572 aaKnown RBP eCLIP13.83□□□□□ -0.19
VRK3-205ENST00000593919 CFAP57Q96MR6 1250 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 PGLYRP2Q96PD5 576 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 HTATIP2Q9BUP3 242 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 FAM204AQ9H8W3 233 aa13.83□□□□□ -0.19
VRK3-205ENST00000593919 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.83□□□□□ -0.19
VRK3-205ENST00000593919 CCDC188H7C350 402 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 H7C4K7 107 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 SART1O43290 800 aaKnown RBP13.83□□□□□ -0.2
VRK3-205ENST00000593919 CPB1P15086 417 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 ARPP19P56211 112 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 HTRA4P83105 476 aaPredicted RBP13.83□□□□□ -0.2
VRK3-205ENST00000593919 NNTQ13423 1086 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 SH3PXD2AQ5TCZ1 1133 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 FAM149B1Q96BN6 582 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 CNPY3Q9BT09 278 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 ULBP1Q9BZM6 244 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 PLXNA4Q9HCM2 1894 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 PNPLA8Q9NP80 782 aa13.83□□□□□ -0.2
VRK3-205ENST00000593919 HSF2BPO75031 334 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 SOD2P04179 222 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 SDC4P31431 198 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 GRIK1P39086 918 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 ATP11AP98196 1134 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 SLC25A11Q02978 314 aaKnown RBP13.82□□□□□ -0.2
VRK3-205ENST00000593919 HLTFQ14527 1009 aaKnown RBP eCLIP13.82□□□□□ -0.2
VRK3-205ENST00000593919 ACAP1Q15027 740 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 CDO1Q16878 200 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 CCDC14Q49A88 953 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 EFHC1Q5JVL4 640 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 SEL1L2Q5TEA6 688 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 TXNRD3NBQ6F5E7 133 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 ARCQ7LC44 396 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 TTC9BQ8N6N2 239 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 ATAD1Q8NBU5 361 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 RUFY1Q96T51 708 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 ZBED2Q9BTP6 218 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 CNGB3Q9NQW8 809 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 CHST7Q9NS84 486 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 ASNSD1Q9NWL6 643 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 AMACRQ9UHK6 382 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 TTC7AQ9ULT0 858 aaPredicted RBP13.82□□□□□ -0.2
VRK3-205ENST00000593919 PCDHB5Q9Y5E4 795 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 CDY1Q9Y6F8 540 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 CDH23Q9H251 3354 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 C2CD2LO14523 706 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 DPYSL4O14531 572 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 RNF8O76064 485 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 FBXO21O94952 628 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 USP17L7P0C7H9 530 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 DAOAP59103 153 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 PSMD5Q16401 504 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 ATP13A4Q4VNC1 1196 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 RAB6CQ53S08 254 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 LRRC38Q5VT99 294 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 DDX42Q86XP3 938 aaKnown RBP eCLIP13.82□□□□□ -0.2
VRK3-205ENST00000593919 SCN4BQ8IWT1 228 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 KATNAL2Q8IYT4 538 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 GOLGA6L1Q8N7Z2 621 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 FBXO22Q8NEZ5 403 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 PIK3R5Q8WYR1 880 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 HERVK_113Q902F9 699 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 RAB6CQ9H0N0 254 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 KLHL11Q9NVR0 708 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 SPG21Q9NZD8 308 aa13.82□□□□□ -0.2
VRK3-205ENST00000593919 PLXNA3P51805 1871 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 MTMR11A4FU01 709 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 YJEFN3A6XGL0 299 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 E7ENQ6 273 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 ZBED1O96006 694 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 LINC00271P0C7V0 271 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 RPL17P18621 184 aaKnown RBP13.81□□□□□ -0.2
VRK3-205ENST00000593919 TFE3P19532 575 aaPredicted RBP13.81□□□□□ -0.2
VRK3-205ENST00000593919 IL1R2P27930 398 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 MIPP30301 263 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 SLC5A3P53794 718 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 GPR17Q13304 367 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 SMTNL2Q2TAL5 461 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 KIAA1841Q6NSI8 718 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 VSTM1Q6UX27 236 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 RNF19BQ6ZMZ0 732 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 HFE2Q6ZVN8 426 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 SCAMP5Q8TAC9 235 aa13.81□□□□□ -0.2
VRK3-205ENST00000593919 FAM172AQ8WUF8 416 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms