RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ZBTB46Q86UZ6 589 aa9.95□□□□□ -0.82
CCDC40-212ENST00000574799 CASP10Q92851 521 aa9.95□□□□□ -0.82
CCDC40-212ENST00000574799 ERLEC1Q96DZ1 483 aa9.95□□□□□ -0.82
CCDC40-212ENST00000574799 LIN28AQ9H9Z2 209 aaKnown RBP9.95□□□□□ -0.82
CCDC40-212ENST00000574799 PCDH18Q9HCL0 1135 aa9.95□□□□□ -0.82
CCDC40-212ENST00000574799 OLFML3Q9NRN5 406 aa9.95□□□□□ -0.82
CCDC40-212ENST00000574799 KCNH7Q9NS40 1196 aa9.95□□□□□ -0.82
CCDC40-212ENST00000574799 BPTFQ12830 3046 aa9.95□□□□□ -0.82
CCDC40-212ENST00000574799 LSM1O15116 133 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 ALDH1A3P47895 512 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 RAP1GDS1P52306 607 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 BST1Q10588 318 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 SPDYAQ5MJ70 313 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 TREML1Q86YW5 311 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 DHX38Q92620 1227 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 ZNF214Q9UL59 606 aaPredicted RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 ANK1P16157 1881 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 GAS7O60861 476 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 ZMPSTE24O75844 475 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 FGFR1P11362 822 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 NELFEP18615 380 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 FDFT1P37268 417 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 EIF2B2P49770 351 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 PSMC1P62191 440 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 TBL3Q12788 808 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 NFX1Q12986 1120 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 SIX1Q15475 284 aaPredicted RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 CTC1Q2NKJ3 1217 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 C1orf220Q5T0J3 134 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 TMCO4Q5TGY1 634 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 ACAD10Q6JQN1 1059 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 ANKRD23Q86SG2 305 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 AZIN2Q96A70 460 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 TAAR1Q96RJ0 339 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 C10orf88Q9H8K7 445 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 RAVER2Q9HCJ3 691 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 AGO4Q9HCK5 861 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 GPAMQ9HCL2 828 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 DMAC2Q9NW81 257 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 DDX43Q9NXZ2 648 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 KCNK4Q9NYG8 393 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 DCAF8L1A6NGE4 600 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 TISP43B9A030 160 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 VWA5AO00534 786 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 AIM2O14862 343 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 OCM2P0CE71 109 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 OCMP0CE72 109 aaPredicted RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 CDK4P11802 303 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 PTPRAP18433 802 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 MX2P20592 715 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 IVDP26440 423 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 PRAMEP78395 509 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 PDE1BQ01064 536 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 FAAP100Q0VG06 881 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 MORF4L2Q15014 288 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 PGM5Q15124 567 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 RALGPS1Q5JS13 557 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 WDR44Q5JSH3 913 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 AAGABQ6PD74 315 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 KLHL35Q6PF15 583 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 USP37Q86T82 979 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 FAM160B2Q86V87 743 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 XXYLT1Q8NBI6 393 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 JADE3Q92613 823 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 SKA1Q96BD8 255 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 MRPL47Q9HD33 250 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 TUFT1Q9NNX1 390 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 C1orf112Q9NSG2 853 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 BCAP29Q9UHQ4 241 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 AP4B1Q9Y6B7 739 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 MYH9P35579 1960 aaKnown RBP9.94□□□□□ -0.82
CCDC40-212ENST00000574799 ATP8B3O60423 1300 aa9.94□□□□□ -0.82
CCDC40-212ENST00000574799 TTLL13PA6NNM8 815 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 H3BSA7 217 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 WDR46O15213 610 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 ATP9BO43861 1147 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 TYROBPO43914 113 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 WEE2P0C1S8 567 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 TKFCQ3LXA3 575 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 ITPRIPL1Q6GPH6 555 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 AMIGO2Q86SJ2 522 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 DDHD1Q8NEL9 900 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 AGR3Q8TD06 166 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 NCSTNQ92542 709 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 PPWD1Q96BP3 646 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 SRPK1Q96SB4 655 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 MCF2LO15068 1137 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 GRIA2P42262 883 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 SMAD1Q15797 465 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 ATP13A4Q4VNC1 1196 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 ZFP28Q8NHY6 868 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 PLEKHO2Q8TD55 490 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 EME1Q96AY2 570 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 TRIM11Q96F44 468 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 APOPT1Q96IL0 206 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 SYT11Q9BT88 431 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 TCN1P20061 433 aaPredicted RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 GLRA2P23416 452 aa9.93□□□□□ -0.82
CCDC40-212ENST00000574799 RPS12P25398 132 aaKnown RBP9.93□□□□□ -0.82
CCDC40-212ENST00000574799 PCYT1AP49585 367 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms