RNA–Protein interactions for RNA: ENST00000569440.5

BBS4-218, Transcript of Bardet-Biedl syndrome 4, human

TSL 4

Gene BBS4, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS4-218	ENST00000569440	RBM8A	Q9Y5S9	174 aa	Known RBP	6.69	□□□□□ -1.34
BBS4-218	ENST00000569440	RAD54B	Q9Y620	910 aa		6.69	□□□□□ -1.34
BBS4-218	ENST00000569440	PTPRD	P23468	1912 aa		6.69	□□□□□ -1.34
BBS4-218	ENST00000569440	C2CD3	Q4AC94	2353 aa		6.69	□□□□□ -1.34
BBS4-218	ENST00000569440	FBN3	Q75N90	2809 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	LAD1	O00515	517 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	TRIM24	O15164	1050 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	SGSM2	O43147	1006 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	HOXC11	O43248	304 aa	Predicted RBP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	FAM87A	P0C7U9	286 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	ODC1	P11926	461 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	PFKL	P17858	780 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	PAX3	P23760	479 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	ACP1	P24666	158 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	ASIC1	P78348	528 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	SLC7A9	P82251	487 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	E2F1	Q01094	437 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	EXOSC10	Q01780	885 aa	Known RBP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	GAD2	Q05329	585 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	ST3GAL1	Q11201	340 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	ORC1	Q13415	861 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	HDAC1	Q13547	482 aa	Predicted RBP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	MCM6	Q14566	821 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	KCNB1	Q14721	858 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	SAFB	Q15424	915 aa	Known RBP eCLIP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	ZNF568	Q3ZCX4	644 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	LY6G5C	Q5SRR4	150 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	SDHAF4	Q5VUM1	108 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	CDCP2	Q5VXM1	449 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	LAYN	Q6UX15	382 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	EID2	Q8N6I1	236 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	RUFY2	Q8WXA3	655 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	EXTL1	Q92935	676 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	CCDC97	Q96F63	343 aa	Predicted RBP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	SENP8	Q96LD8	212 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	ELF4	Q99607	663 aa	Predicted RBP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	MKRN2	Q9H000	416 aa	Known RBP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	SLC25A18	Q9H1K4	315 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	SH3GLB2	Q9NR46	395 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	THSD1	Q9NS62	852 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	TMLHE	Q9NVH6	421 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	ABI2	Q9NYB9	513 aa	Predicted RBP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	VPS54	Q9P1Q0	977 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	DEC1	Q9P2X7	70 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	RCAN3	Q9UKA8	241 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	PCDHA4	Q9UN74	947 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	CSMD1	Q96PZ7	3565 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	PLXND1	Q9Y4D7	1925 aa		6.68	□□□□□ -1.34
BBS4-218	ENST00000569440	AHCTF1	Q8WYP5	2266 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	KIAA1549L	Q6ZVL6	1849 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	GOLGA4	Q13439	2230 aa	Known RBP	6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	CABIN1	Q9Y6J0	2220 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	DNHD1	Q96M86	4753 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	CCDC196	A0A1B0GTZ2	297 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	WASH3P	C4AMC7	463 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440		K7ERI5	159 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	PPEF2	O14830	753 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	SLC27A2	O14975	620 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	USP12	O75317	370 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	PPFIA2	O75334	1257 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	OLFM2	O95897	454 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	ITGAV	P06756	1048 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	CHML	P26374	656 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	AFM	P43652	599 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	PDE6C	P51160	858 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	NLRP5	P59047	1200 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	HNRNPU	Q00839	825 aa	Known RBP eCLIP	6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	GUCA2A	Q02747	115 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	GRIN1	Q05586	938 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	CLN3	Q13286	438 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	PPP2R5A	Q15172	486 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	NPY5R	Q15761	445 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	DDR2	Q16832	855 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	INF2	Q27J81	1249 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	FUT11	Q495W5	492 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	PRAMEF14	Q5SWL7	426 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	NAT16	Q8N8M0	369 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	FSIP1	Q8NA03	581 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	SLC46A1	Q96NT5	459 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	CCNL2	Q96S94	520 aa	Predicted RBP	6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	ORAI3	Q9BRQ5	295 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	ARHGAP9	Q9BRR9	750 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	RNF38	Q9H0F5	515 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	C6orf106	Q9H6K1	298 aa	Predicted RBP	6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	PLEKHA5	Q9HAU0	1116 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	GEMIN8	Q9NWZ8	242 aa	Known RBP	6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	DSE	Q9UL01	958 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	PCDHB6	Q9Y5E3	794 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	PCDHB5	Q9Y5E4	795 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	BOD1L1	Q8NFC6	3051 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	PI4KA	P42356	2102 aa		6.67	□□□□□ -1.34
BBS4-218	ENST00000569440	KLF18	A0A0U1RQI7	1052 aa		6.66	□□□□□ -1.34
BBS4-218	ENST00000569440		A0A1W2PNU3	283 aa	Predicted RBP	6.66	□□□□□ -1.34
BBS4-218	ENST00000569440	TTC26	A0AVF1	554 aa		6.66	□□□□□ -1.34
BBS4-218	ENST00000569440	PRRT4	C9JH25	899 aa		6.66	□□□□□ -1.34
BBS4-218	ENST00000569440	SCAMP3	O14828	347 aa	Known RBP	6.66	□□□□□ -1.34
BBS4-218	ENST00000569440	VILL	O15195	856 aa		6.66	□□□□□ -1.34
BBS4-218	ENST00000569440	TSPAN3	O60637	253 aa		6.66	□□□□□ -1.34

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