RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 NAT16Q8N8M0 369 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 KCNK16Q96T55 309 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 PILRBQ9UKJ0 227 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 UBE4BO95155 1302 aa16.37■□□□□ 0.21
RTN3-211ENST00000542238 AKAP13Q12802 2813 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 HOXC11O43248 304 aaPredicted RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 TGFB1I1O43294 461 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 TULP3O75386 442 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 TOP3BO95985 862 aaKnown RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 ITPKAP23677 461 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 RDXP35241 583 aaKnown RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 NASPP49321 788 aaPredicted RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 TUBP50607 506 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 RPL6Q02878 288 aaKnown RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 GFPT1Q06210 699 aaPredicted RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 DUOXA1Q1HG43 343 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 C10orf76Q5T2E6 689 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 SNX30Q5VWJ9 437 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 SDE2Q6IQ49 451 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 RABEPKQ7Z6M1 372 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 NELFCDQ8IXH7 590 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 ETFBKMTQ8IXQ9 262 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 PHTF2Q8N3S3 785 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 IQUBQ8NA54 791 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 SCAMP5Q8TAC9 235 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 DHX58Q96C10 678 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 TNIP3Q96KP6 325 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 ZFRQ96KR1 1074 aaKnown RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 DUSP9Q99956 384 aaKnown RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 CCSER2Q9H7U1 834 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 DMAP1Q9NPF5 467 aaPredicted RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 SPHK2Q9NRA0 654 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 COMMD8Q9NX08 183 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 CGNQ9P2M7 1197 aaKnown RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 SLC6A14Q9UN76 642 aa16.36■□□□□ 0.21
RTN3-211ENST00000542238 ATXN2Q99700 1313 aaKnown RBP16.36■□□□□ 0.21
RTN3-211ENST00000542238 NTSR1P30989 418 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 SLC5A3P53794 718 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 BIRC3Q13489 604 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 E2F4Q16254 413 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 ZNF667Q5HYK9 610 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 PEAR1Q5VY43 1037 aaPredicted RBP16.35■□□□□ 0.21
RTN3-211ENST00000542238 KIAA1211LQ6NV74 962 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 CNNM4Q6P4Q7 775 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 FAM35AQ86V20 835 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 BBS7Q8IWZ6 715 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 TERB1Q8NA31 727 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 ZNF516Q92618 1163 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 GATA6Q92908 595 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 SMARCD1Q96GM5 515 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 GTPBP2Q9BX10 602 aaKnown RBP16.35■□□□□ 0.21
RTN3-211ENST00000542238 TMEM121BQ9BXQ6 578 aaPredicted RBP16.35■□□□□ 0.21
RTN3-211ENST00000542238 XYLT2Q9H1B5 865 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 NEUROG3Q9Y4Z2 214 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 CACNA1EQ15878 2313 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 ATRXP46100 2492 aa16.35■□□□□ 0.21
RTN3-211ENST00000542238 UPK3BL1B0FP48 263 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 UPK3BL2E5RIL1 263 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 SPTLC2O15270 562 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 EXOC3O60645 756 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 OPHN1O60890 802 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 SERPINF2P08697 491 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 IRF1P10914 325 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 HOXB2P14652 356 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 GABRG2P18507 467 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 AP3M2P53677 418 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 SIM1P81133 766 aaPredicted RBP16.34■□□□□ 0.21
RTN3-211ENST00000542238 SEMA3BQ13214 749 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 ZNF699Q32M78 642 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 GRAMD4Q6IC98 578 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 TMEM25Q86YD3 366 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 LINC00301Q8NCQ3 95 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 SCFD1Q8WVM8 642 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 C7orf25Q9BPX7 421 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 SMYD3Q9H7B4 428 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 VRTNQ9H8Y1 702 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 IL37Q9NZH6 218 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 GMIPQ9P107 970 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 CALCOCO1Q9P1Z2 691 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 MTMR6Q9Y217 621 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 STARD13Q9Y3M8 1113 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 ZZEF1O43149 2961 aa16.34■□□□□ 0.21
RTN3-211ENST00000542238 ZFYVE26Q68DK2 2539 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 SPAARA0A1B0GVQ0 90 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 HYAL3O43820 417 aaPredicted RBP16.33■□□□□ 0.2
RTN3-211ENST00000542238 PPP6R2O75170 966 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 ZNF217O75362 1048 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 AP1G2O75843 785 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 ZDHHC11BP0C7U3 371 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 P4HA1P13674 534 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 WASP42768 502 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 CDH8P55286 799 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 ZNF33AQ06730 810 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 GOLGA8FQ08AF8 430 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 GOLGA8DPQ0D2H9 430 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 UNC13DQ70J99 1090 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 PIP4P1Q86T03 277 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 C12orf56Q8IXR9 622 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 CHPFQ8IZ52 775 aa16.33■□□□□ 0.2
RTN3-211ENST00000542238 DEFB119Q8N690 84 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms