RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SIPA1L1O43166 1804 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 LOC100653049A0A140TA62 436 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 WDR46O15213 610 aaKnown RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 KRT34O76011 436 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 TOP3BO95985 862 aaKnown RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 ZBED1O96006 694 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 EIF4BP23588 611 aaKnown RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 STIP1P31948 543 aaKnown RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 RANBP1P43487 201 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 YWHAEP62258 255 aaKnown RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 PDCD2Q16342 344 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 GRAMD1BQ3KR37 738 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 LRRC23Q53EV4 343 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 RSPH3Q86UC2 560 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 ARFGAP1Q8N6T3 406 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 C7orf26Q96N11 449 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 USP18Q9UMW8 372 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 SOX13Q9UN79 622 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 TEX264Q9Y6I9 313 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 F5H423 210 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 TSHRP16473 764 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 MCCD1P59942 119 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 EFHC1Q5JVL4 640 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 LPCAT4Q643R3 524 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 CASC4Q6P4E1 433 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 ISLR2Q6UXK2 745 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 MYLK4Q86YV6 388 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 EFCAB3Q8N7B9 438 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 ZNF668Q96K58 619 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 TRIM56Q9BRZ2 755 aaKnown RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 CNTN3Q9P232 1028 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 APOBEC2Q9Y235 224 aaKnown RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 CAPN14A8MX76 684 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 LYPLA1O75608 230 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 GRAP2O75791 330 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 NCF2P19878 526 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 TRIP10Q15642 601 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 DUOXA2Q1HG44 320 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 LIN52Q52LA3 116 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 FAM102AQ5T9C2 384 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 C16orf46Q6P387 395 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 ARHGAP22Q7Z5H3 698 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 OR6Y1Q8NGX8 325 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 DEPDC1BQ8WUY9 529 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 ADPGKQ9BRR6 497 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 RSAD1Q9HA92 442 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 POLIQ9UNA4 740 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 CNTN6Q9UQ52 1028 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 EFR3BQ9Y2G0 817 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 DNAJC16Q9Y2G8 782 aa11.69□□□□□ -0.54
SYNE1-237ENST00000539504 HBS1LQ9Y450 684 aaKnown RBP11.69□□□□□ -0.54
SYNE1-237ENST00000539504 ZNFX1Q9P2E3 1918 aaKnown RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 YDJCA8MPS7 323 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 RNASEH1O60930 286 aaKnown RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 FKBP6O75344 327 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 ABCD1P33897 745 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 ZNF132P52740 706 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 ENPEPQ07075 957 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 DENND5BQ6ZUT9 1274 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 VSIG10LQ86VR7 867 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 NIPA2Q8N8Q9 360 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 SHKBP1Q8TBC3 707 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 GPRASP2Q96D09 838 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 MMP19Q99542 508 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 EPAS1Q99814 870 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 KLC2Q9H0B6 622 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 XAB2Q9HCS7 855 aaKnown RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 DMAP1Q9NPF5 467 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 GPATCH2LQ9NWQ4 482 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 TCRBV5S1A1TA0A578 114 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 ANKRD33BA6NCL7 494 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 SRGAP2CP0DJJ0 459 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 CDH8P55286 799 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 TGFB2P61812 414 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 RPL10AP62906 217 aaKnown RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 YWHAZP63104 245 aaKnown RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 MMEL1Q495T6 779 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 RALGPS1Q5JS13 557 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 RABGAP1LQ5R372 815 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 CCDC33Q8N5R6 958 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 ATG4CQ96DT6 458 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 OLFM3Q96PB7 478 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 SPATA16Q9BXB7 569 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 RIPK3Q9Y572 518 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 CNTNAP2Q9UHC6 1331 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 KLF11O14901 512 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 HSPA1LP34931 641 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 TFDP2Q14188 446 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 HSF5Q4G112 596 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 ANGEL2Q5VTE6 544 aaKnown RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 BSPRYQ5W0U4 402 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 MARK2Q7KZI7 788 aaKnown RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 DHDDSQ86SQ9 333 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 CDR2LQ86X02 465 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 CPXM1Q96SM3 734 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 NDNQ99608 321 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 RPAP3Q9H6T3 665 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-237ENST00000539504 IFT122Q9HBG6 1241 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms