RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 FBXO21O94952 628 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 LSM8O95777 96 aaKnown RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 CCDC172P0C7W6 258 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 CSH1P0DML2 217 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 CSH2P0DML3 217 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 MYBP10242 640 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 HAPLN1P10915 354 aaPredicted RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 FGFR1P11362 822 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 ATF2P15336 505 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 ZNF18P17022 549 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 CDC25CP30307 473 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 NMT1P30419 496 aaKnown RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 MCM4P33991 863 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 ACADSBP45954 432 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 KPNA1P52294 538 aaPredicted RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 LILRA4P59901 499 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 DAB2P98082 770 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 CDK17Q00537 523 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 MAN2A1Q16706 1144 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 MAP7D1Q3KQU3 841 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 INTS6LQ5JSJ4 861 aaKnown RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 C1orf220Q5T0J3 134 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 SARM1Q6SZW1 724 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 USP49Q70CQ1 688 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 DEFB128Q7Z7B8 93 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 VSIG1Q86XK7 387 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 FAM217AQ8IXS0 508 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 KLHL23Q8NBE8 558 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 EHBP1Q8NDI1 1231 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 RASSF8Q8NHQ8 419 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 POF1BQ8WVV4 589 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 POMGNT1Q8WZA1 660 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 CENPTQ96BT3 561 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 HSFY1Q96LI6 401 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 VN1R3Q9BXE9 311 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 LRRC3Q9BY71 257 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 ELOVL4Q9GZR5 314 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 SNTG2Q9NY99 539 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 PARP2Q9UGN5 583 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 STOML2Q9UJZ1 356 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 NOTCH2Q04721 2471 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 KPNA7A9QM74 516 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 C2CD4DB7Z1M9 353 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 ZBTB39O15060 712 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 NCAM2O15394 837 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 CTSHP09668 335 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 ATP1A3P13637 1013 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 IL4RP24394 825 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 HNRNPH3P31942 346 aaKnown RBP3.01□□□□□ -1.93
MCF2-208ENST00000519895 ALDH1A3P47895 512 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 CD97P48960 835 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 NRG1Q02297 640 aaPredicted RBP3.01□□□□□ -1.93
MCF2-208ENST00000519895 STK4Q13043 487 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 PLEKHG6Q3KR16 790 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 RAB41Q5JT25 222 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 PRSS36Q5K4E3 855 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 DPY19L2P1Q6NXN4 242 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 MSANTD2Q6P1R3 559 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 EP400NLQ6ZTU2 488 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 OTOP3Q7RTS5 596 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 PRICKLE2Q7Z3G6 844 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 FAM186BQ8IYM0 893 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 SYCP3Q8IZU3 236 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 KDM1BQ8NB78 822 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 LMO3Q8TAP4 145 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 ELSPBP1Q96BH3 223 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 VCPIP1Q96JH7 1222 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 NIF3L1Q9GZT8 377 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 RUBCNLQ9H714 662 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 PCDH12Q9NPG4 1184 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 OLA1Q9NTK5 396 aaKnown RBP3.01□□□□□ -1.93
MCF2-208ENST00000519895 MIOSQ9NXC5 875 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 CLIC5Q9NZA1 410 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 SIX4Q9UIU6 781 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 BARX2Q9UMQ3 279 aaPredicted RBP3.01□□□□□ -1.93
MCF2-208ENST00000519895 PCDHGB7Q9Y5F8 929 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 DDX49Q9Y6V7 483 aaKnown RBP3.01□□□□□ -1.93
MCF2-208ENST00000519895 PLXND1Q9Y4D7 1925 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 LRRIQ3A6PVS8 624 aaPredicted RBP3.01□□□□□ -1.93
MCF2-208ENST00000519895 ZNF487B1APH4 448 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 KDM4EB2RXH2 506 aaPredicted RBP3.01□□□□□ -1.93
MCF2-208ENST00000519895 B4GALT5O43286 388 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 TADA2AO75478 443 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 GLUD1P00367 558 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 TPM2P07951 284 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 VDRP11473 427 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 SRFP11831 508 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 CDC25BP30305 580 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 DPP6P42658 865 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 PRCPP42785 496 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 GABRB2P47870 512 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 AIF1P55008 147 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 SLC7A9P82251 487 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 TSPY1Q01534 308 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 SP4Q02446 784 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 NFX1Q12986 1120 aaKnown RBP3.01□□□□□ -1.93
MCF2-208ENST00000519895 PKP1Q13835 747 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 SIM2Q14190 667 aaPredicted RBP3.01□□□□□ -1.93
MCF2-208ENST00000519895 PSMD5Q16401 504 aa3.01□□□□□ -1.93
MCF2-208ENST00000519895 FOXD4L6Q3SYB3 417 aaPredicted RBP3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms