RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SFXN1Q9H9B4 322 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 GKN1Q9NS71 199 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 FANCLQ9NW38 375 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 ZNF711Q9Y462 761 aa8.3□□□□□ -1.08
LIMCH1-219ENST00000514096 C5orf67F2Z3F1 127 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 TNFRSF10AO00220 468 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 MBD3O95983 291 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 MXRA7P84157 204 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 KCNH2Q12809 1159 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 MORC3Q14149 939 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 PCBP1Q15365 356 aaKnown RBP eCLIP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 GKAP1Q5VSY0 366 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 TANGO2Q6ICL3 276 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 LUZP1Q86V48 1076 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 GSDMAQ96QA5 445 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 GCNT4Q9P109 453 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 PCDHB5Q9Y5E4 795 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 FAM169AQ9Y6X4 670 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 PDXKO00764 312 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 SERPINC1P01008 464 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 ATP1A3P13637 1013 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 ATF2P15336 505 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 KCNE1P15382 129 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 RPL9P32969 192 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 UBE3AQ05086 875 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 GPR153Q6NV75 609 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 CD300LGQ6UXG3 332 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 PPFIBP1Q86W92 1011 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 CYFIP2Q96F07 1278 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 SLC22A12Q96S37 553 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 CGRRF1Q99675 332 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 SLC39A3Q9BRY0 314 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 IRX2Q9BZI1 471 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 KCTD10Q9H3F6 313 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 CHST7Q9NS84 486 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 NAGPAQ9UK23 515 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 FHOD1Q9Y613 1164 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 SIP14410 1827 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 LINC00854A0A1B0GVQ3 168 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 C2orf78A6NCI8 922 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 ZSCAN9O15535 394 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 CCNE1P24864 410 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 SEC13P55735 322 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 SF3A3Q12874 501 aaKnown RBP eCLIP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 CUL3Q13618 768 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 HFE2Q6ZVN8 426 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 GUF1Q8N442 669 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 FBXO32Q969P5 355 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 GFM2Q969S9 779 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 PRKD2Q9BZL6 878 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 ZNF334Q9HCZ1 680 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 PAPOLBQ9NRJ5 636 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 DNAAF2Q9NVR5 837 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 CCL26Q9Y258 94 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 WNT6Q9Y6F9 365 aa8.29□□□□□ -1.08
LIMCH1-219ENST00000514096 URB1O60287 2271 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ZSCAN12O43309 604 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 BEST1O76090 585 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ALOX15P16050 662 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 PTPN2P17706 415 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 PTPN1P18031 435 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 HDCP19113 662 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 USP46P62068 366 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ZP2Q05996 745 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 CETN1Q12798 172 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 SMAD4Q13485 552 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ANO4Q32M45 955 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 KRT39Q6A163 491 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 C1orf228Q6PIY5 440 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 DCP1BQ8IZD4 617 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 FBXL13Q8NEE6 735 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 PPP1R14BQ96C90 147 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 VMP1Q96GC9 406 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 CAPS2Q9BXY5 557 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 SDCBP2Q9H190 292 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 PLEKHA5Q9HAU0 1116 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 APOBEC3GQ9HC16 384 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 METTL14Q9HCE5 456 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 PFDN4Q9NQP4 134 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 RAB20Q9NX57 234 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 PTPRSQ13332 1948 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ANKRD33BA6NCL7 494 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 EIF3DO15371 548 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 FAM189A1O60320 539 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ZMYND10O75800 440 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 VNN1O95497 513 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 MBL2P11226 248 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 PCSK1P29120 753 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 TAF10Q12962 218 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ALCAMQ13740 583 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 C2orf27AQ580R0 203 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 HSP90AA5PQ58FG0 334 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ALKAL1Q6UXT8 129 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 INTS8Q75QN2 995 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ADSSL1Q8N142 457 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 ARHGAP18Q8N392 663 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 MRPS31Q92665 395 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 CLSTN2Q9H4D0 955 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 CRTAC1Q9NQ79 661 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms