RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 OGDHLQ9ULD0 1010 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 TCRBV7S2A1N4TA0A589 114 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 GOLGA6CA6NDK9 693 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 MEIS3P2A8K0S8 358 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 PQBP1O60828 265 aaKnown RBP6.29□□□□□ -1.4
VPS50-205ENST00000441602 PPFIA2O75334 1257 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 GOLGA6DP0CG33 693 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 BRCC3P46736 316 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 RPL21P46778 160 aaKnown RBP6.29□□□□□ -1.4
VPS50-205ENST00000441602 DYNLT1P63172 113 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 LLGL1Q15334 1064 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 SMTNL2Q2TAL5 461 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 SLC25A52Q3SY17 297 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 DARS2Q6PI48 645 aaKnown RBP6.29□□□□□ -1.4
VPS50-205ENST00000441602 DEFB106AQ8N104 65 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 ATG4AQ8WYN0 398 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 ART4Q93070 314 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 SLC9A7Q96T83 725 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 ULBP1Q9BZM6 244 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 DHX35Q9H5Z1 703 aaKnown RBP6.29□□□□□ -1.4
VPS50-205ENST00000441602 CRTAC1Q9NQ79 661 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 PAK6Q9NQU5 681 aaPredicted RBP6.29□□□□□ -1.4
VPS50-205ENST00000441602 GOLGA6AQ9NYA3 693 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 VPS18Q9P253 973 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 AP4E1Q9UPM8 1137 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 PLAAQ9Y263 795 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 FAN1Q9Y2M0 1017 aa6.29□□□□□ -1.4
VPS50-205ENST00000441602 TIMM13Q9Y5L4 95 aaPredicted RBP6.29□□□□□ -1.4
VPS50-205ENST00000441602 PDCD11Q14690 1871 aaKnown RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 HMGB1P1B2RPK0 211 aaPredicted RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 RNF40O75150 1001 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 ZBED1O96006 694 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 IFNB1P01574 187 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 LTFP02788 710 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 ALDH2P05091 517 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 TKTP29401 623 aaKnown RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 ATP5DP30049 168 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 DAOAP59103 153 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 CAP1Q01518 475 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 OTUD4Q01804 1114 aaKnown RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 TAZQ16635 292 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 C15orf59Q2T9L4 293 aaPredicted RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 ATP13A4Q4VNC1 1196 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 PLEKHG4Q58EX7 1191 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 CEP85LQ5SZL2 805 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 CLEC20AQ6ZU45 233 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 TMC3Q7Z5M5 1100 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 CCDC25Q86WR0 208 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 ALLCQ8N6M5 410 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 DBF4BQ8NFT6 615 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 ACTL9Q8TC94 416 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 FUBP3Q96I24 572 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS50-205ENST00000441602 CFAP57Q96MR6 1250 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 TTC25Q96NG3 672 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 TOX2Q96NM4 488 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 RNF157Q96PX1 679 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 SNRNP25Q9BV90 132 aaKnown RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 FRMD8Q9BZ67 464 aaPredicted RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 HIPK3Q9H422 1215 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 FAM204AQ9H8W3 233 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 TBC1D13Q9NVG8 400 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 ATP8A1Q9Y2Q0 1164 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 PRG3Q9Y2Y8 225 aaPredicted RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 PCDHB5Q9Y5E4 795 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 SF3B1O75533 1304 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS50-205ENST00000441602 ENPP3O14638 875 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 TRIM66O15016 1216 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 EFCAB14O75071 495 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 ATP2C2O75185 946 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 RARGP13631 454 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 CYP2C18P33260 490 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 GGCXP38435 758 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 NR2C2P49116 596 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 ARSEP51690 589 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 DSC1Q08554 894 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 DCAF6Q58WW2 860 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 VSTM1Q6UX27 236 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 BEND5Q7L4P6 421 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 LRRC43Q8N309 656 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 RNF139Q8WU17 664 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 RNF34Q969K3 372 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 PCED1BQ96HM7 432 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 SLC2A13Q96QE2 648 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 PCDH18Q9HCL0 1135 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 TPX2Q9ULW0 747 aaKnown RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 SHOC2Q9UQ13 582 aa6.28□□□□□ -1.4
VPS50-205ENST00000441602 R3HDM2Q9Y2K5 976 aaKnown RBP6.28□□□□□ -1.4
VPS50-205ENST00000441602 MYBPHLA2RUH7 354 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 TULP2O00295 520 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 CLDN5O00501 218 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 DNALI1O14645 258 aaPredicted RBP6.27□□□□□ -1.41
VPS50-205ENST00000441602 FAM153BP0C7A2 387 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 RBP3P10745 1247 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 ATP2A2P16615 1042 aaKnown RBP6.27□□□□□ -1.41
VPS50-205ENST00000441602 IL1R2P27930 398 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 HSD17B3P37058 310 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 VPS41P49754 854 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 ADCY2Q08462 1091 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 MORF4L2Q15014 288 aa6.27□□□□□ -1.41
VPS50-205ENST00000441602 KRT71Q3SY84 523 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms