RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 GPC1P35052 558 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 RXRGP48443 463 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 CTXN3Q4LDR2 81 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 TMEM154Q6P9G4 183 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 METTL7BQ6UX53 244 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 DENND5BQ6ZUT9 1274 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 CCDC60Q8IWA6 550 aaPredicted RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 GALNT4Q8N4A0 578 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.19□□□□□ -0.3
LDB3-205ENST00000429277 VPS33AQ96AX1 596 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 TMEM176AQ96HP8 235 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 MTMR12Q9C0I1 747 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 FBXO44Q9H4M3 255 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 AHSPQ9NZD4 102 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 SLC37A4O43826 429 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 ATP5BP06576 529 aaKnown RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 TRIP4Q15650 581 aaPredicted RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 CCDC92Q53HC0 331 aaPredicted RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 SLC30A9Q6PML9 568 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 LZTR1Q8N653 840 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 ZNF557Q8N988 423 aaPredicted RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 VCPIP1Q96JH7 1222 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 PALMDQ9NP74 551 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 MAGEA13PA6NCF6 341 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 TTLL13PA6NNM8 815 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 DARSP14868 501 aaKnown RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 DPEP1P16444 411 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 IRX1P78414 480 aaPredicted RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 DSG1Q02413 1049 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 CYP24A1Q07973 514 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 GIT2Q14161 759 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 CCDC142Q17RM4 750 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 IYDQ6PHW0 289 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 BNC2Q6ZN30 1099 aaPredicted RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 CENPLQ8N0S6 344 aaPredicted RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 OSBPL10Q9BXB5 764 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 KRT84Q9NSB2 600 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 POLG2Q9UHN1 485 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 LOC100653049A0A140TA62 436 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 KRT34O76011 436 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 GLP2RO95838 553 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 MPOP05164 745 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 CKMP06732 381 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 AXLP30530 894 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 SOX6P35712 828 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 CYP51A1Q16850 503 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 LRRC36Q1X8D7 754 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 RETSATQ6NUM9 610 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 SPOCD1Q6ZMY3 1216 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 NIPA1Q7RTP0 329 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 MAN1C1Q9NR34 630 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 ENOPH1Q9UHY7 261 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 RUVBL2Q9Y230 463 aaKnown RBP13.19□□□□□ -0.3
LDB3-205ENST00000429277 ADGRA3Q8IWK6 1321 aa13.19□□□□□ -0.3
LDB3-205ENST00000429277 SGPL1O95470 568 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 TPBGLP0DKB5 382 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 RHOAP61586 193 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 PTPN11Q06124 597 aaPredicted RBP13.18□□□□□ -0.3
LDB3-205ENST00000429277 FAM117BQ6P1L5 589 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 ACOT1Q86TX2 421 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 CBWD2Q8IUF1 395 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 ATP8B4Q8TF62 1192 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 SIKE1Q9BRV8 207 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 ADAM33Q9BZ11 813 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 ZCCHC2Q9C0B9 1178 aaKnown RBP13.18□□□□□ -0.3
LDB3-205ENST00000429277 ZSCAN32Q9NX65 697 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 CYP39A1Q9NYL5 469 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 A0A087X0T9 212 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 RNF103O00237 685 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 MED24O75448 989 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 TFRCP02786 760 aaKnown RBP13.18□□□□□ -0.3
LDB3-205ENST00000429277 FAM228BP0C875 321 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 TCN1P20061 433 aaPredicted RBP13.18□□□□□ -0.3
LDB3-205ENST00000429277 CALB2P22676 271 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 CHI3L1P36222 383 aaPredicted RBP13.18□□□□□ -0.3
LDB3-205ENST00000429277 OTUD4Q01804 1114 aaKnown RBP13.18□□□□□ -0.3
LDB3-205ENST00000429277 MGAT5Q09328 741 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 DNAJC3Q13217 504 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 PTPAQ15257 358 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 NYAP1Q6ZVC0 841 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 KCNB2Q92953 911 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 TLR8Q9NR97 1041 aaKnown RBP13.18□□□□□ -0.3
LDB3-205ENST00000429277 USP18Q9UMW8 372 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 ZNF711Q9Y462 761 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 MGAT4DA6NG13 374 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 OAZ1P54368 228 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 PAPD7Q5XG87 772 aaKnown RBP13.18□□□□□ -0.3
LDB3-205ENST00000429277 ZNF720Q7Z2F6 126 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 PCDH9Q9HC56 1237 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 STK39Q9UEW8 545 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 SHOC2Q9UQ13 582 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 CHD1O14646 1710 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 CEMIPQ8WUJ3 1361 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 TMEM114B3SHH9 223 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 RAD23AP54725 363 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 PRMT9Q6P2P2 845 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 DDX42Q86XP3 938 aaKnown RBP eCLIP13.18□□□□□ -0.3
LDB3-205ENST00000429277 USE1Q9NZ43 259 aa13.18□□□□□ -0.3
LDB3-205ENST00000429277 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.18□□□□□ -0.3
LDB3-205ENST00000429277 ABCA6Q8N139 1617 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms