RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 NPR1P16066 1061 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 CDK11BP21127 795 aaKnown RBP4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC6A4P31645 630 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 ADD2P35612 726 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF280AP59817 542 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 CDC42EP1Q00587 391 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 CHAF1AQ13111 956 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF169Q14929 603 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 NECTIN1Q15223 517 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 IMMTQ16891 758 aaKnown RBP4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 INAVAQ3KP66 663 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 C3orf36Q3SXR2 165 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 PREPLQ4J6C6 727 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 PABPC1LQ4VXU2 614 aaKnown RBP4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 DACT2Q5SW24 774 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC9C2Q5TAH2 1124 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 KRTAP5-3Q6L8H2 238 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 PRIMA1Q86XR5 153 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 DZIP1Q86YF9 867 aaKnown RBP4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 MAGEB6Q8N7X4 407 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 MAP4K1Q92918 833 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 CLPTM1LQ96KA5 538 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 BRIP1Q9BX63 1249 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 TLR10Q9BXR5 811 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 PDRG1Q9NUG6 133 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 KCTD5Q9NXV2 234 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 CHMP5Q9NZZ3 219 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 RAI14Q9P0K7 980 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 ABCF2Q9UG63 623 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 CTNNA3Q9UI47 895 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 LIMCH1Q9UPQ0 1083 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 ADAMTSL1Q8N6G6 1762 aa4.4□□□□□ -1.71
HMGB3P20-201ENST00000417997 KAT6AQ92794 2004 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 C10orf71Q711Q0 1435 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 BRCA1P38398 1863 aaKnown RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCSK5Q92824 1860 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 MYH1P12882 1939 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 DDX60LQ5H9U9 1706 aaKnown RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 SHTN1A0MZ66 631 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 MYADML2A6NDP7 307 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 H0YIN7 160 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 HTRA2O43464 458 aaPredicted RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCDHGA12O60330 932 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 BBOX1O75936 387 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZFPL1O95159 310 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 MBD4O95243 580 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 HSPD1P10809 573 aaKnown RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 CD38P28907 300 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 ALDH1B1P30837 517 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 WASP42768 502 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 TDO2P48775 406 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 CDKN1CP49918 316 aaPredicted RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 SIM1P81133 766 aaPredicted RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 GPSM2P81274 684 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF844Q08AG5 666 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 MTMR1Q13613 665 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 ANKRD1Q15327 319 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCBP2Q15366 365 aaKnown RBP eCLIP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 CCDC142Q17RM4 750 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 CRY2Q49AN0 593 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 NAA16Q6N069 864 aaPredicted RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 RUFY3Q7L099 469 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 DEFB132Q7Z7B7 95 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 C2CD5Q86YS7 1000 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 IFI44Q8TCB0 444 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF622Q969S3 477 aaKnown RBP eCLIP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 MASTLQ96GX5 879 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 TEKT5Q96M29 485 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 NEK1Q96PY6 1258 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 CAMKK2Q96RR4 588 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 HEPHQ9BQS7 1158 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 SPATA5L1Q9BVQ7 753 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 NACAP1Q9BZK3 213 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 IMPG2Q9BZV3 1241 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 TM6SF1Q9BZW5 370 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 NAPBQ9H115 298 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PRDM13Q9H4Q3 707 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 ADARB2Q9NS39 739 aaKnown RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCDHGA9Q9Y5G4 932 aaKnown RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCDHGA8Q9Y5G5 932 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCDHGA7Q9Y5G6 932 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCDHGA6Q9Y5G7 932 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCDHGA3Q9Y5H0 932 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 PDS5AQ29RF7 1337 aaKnown RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF646O15015 1829 aaPredicted RBP4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLX4Q8IY92 1834 aa4.39□□□□□ -1.71
HMGB3P20-201ENST00000417997 TOR1BO14657 336 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF213O14771 459 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 CYP21A2P08686 494 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 HMGB1P09429 215 aaKnown RBP4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 SRGNP10124 158 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 CPA1P15085 419 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 RPS6KB1P23443 525 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 CCND1P24385 295 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 KLRK1P26718 216 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 AK2P54819 239 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 HAND2P61296 217 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 GSTO1P78417 241 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 FPGSQ05932 587 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 TRDNQ13061 729 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms