RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 RFWD2Q8NHY2 731 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 RBM15Q96T37 977 aaKnown RBP eCLIP11.61□□□□□ -0.551e-11■■■■□ 20.4
CUX1-204ENST00000393824 TRIM55Q9BYV6 548 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 ETNK2Q9NVF9 386 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 MYH11P35749 1972 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 RNASEH1O60930 286 aaKnown RBP11.6□□□□□ -0.55
CUX1-204ENST00000393824 AMPD1P23109 780 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 PGM1P36871 562 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 CCNFP41002 786 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 CYP2J2P51589 502 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 BPIFB4P59827 614 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 SNRPFP62306 86 aaKnown RBP11.6□□□□□ -0.55
CUX1-204ENST00000393824 CDK16Q00536 496 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 CENPCQ03188 943 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 CDC16Q13042 620 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 CAPSQ13938 189 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 TRIP13Q15645 432 aaPredicted RBP11.6□□□□□ -0.55
CUX1-204ENST00000393824 EPC2Q52LR7 807 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 HAUS6Q7Z4H7 955 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 ADGRG6Q86SQ4 1221 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 CPNE8Q86YQ8 564 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 FAM71AQ8IYT1 594 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 C4orf33Q8N1A6 199 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 VPS11Q9H270 941 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 DCTN4Q9UJW0 460 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 NOCTQ9UK39 431 aaKnown RBP11.6□□□□□ -0.55
CUX1-204ENST00000393824 EVPLQ92817 2033 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 HBP1O60381 514 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 LRRN2O75325 713 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 IQCF3P0C7M6 154 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 TRIM49P0CI25 452 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 TRIM49CP0CI26 452 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 ETS2P15036 469 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 GRK4P32298 578 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 SLC26A2P50443 739 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 ARFIP2P53365 341 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 NCKAP1LP55160 1127 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 GJA9P57773 515 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 AP2B1P63010 937 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 TMEM62Q0P6H9 643 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 MPP3Q13368 585 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 GRIK4Q16099 956 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 CCDC142Q17RM4 750 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 TRMT5Q32P41 509 aaKnown RBP11.6□□□□□ -0.55
CUX1-204ENST00000393824 TMEM259Q4ZIN3 620 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 LHX8Q68G74 356 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 EFCAB12Q6NXP0 572 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 TMPRSS6Q8IU80 811 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 MCPH1Q8NEM0 835 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 PXYLP1Q8TE99 480 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 ATG4AQ8WYN0 398 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 FAM167AQ96KS9 214 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 PCDHB18PQ96TA0 734 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 LBHD1Q9BQE6 289 aaPredicted RBP11.6□□□□□ -0.55
CUX1-204ENST00000393824 BEGAINQ9BUH8 593 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 NUP85Q9BW27 656 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 AP5M1Q9H0R1 490 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 TMEM206Q9H813 350 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 KCNK13Q9HB14 408 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 XPNPEP3Q9NQH7 507 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 CHORDC1Q9UHD1 332 aaPredicted RBP11.6□□□□□ -0.55
CUX1-204ENST00000393824 SLC24A2Q9UI40 661 aa11.6□□□□□ -0.55
CUX1-204ENST00000393824 FAM170AA1A519 330 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 DENND3A2RUS2 1198 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 PFDN1O60925 122 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 VTNP04004 478 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 SRGAP2CP0DJJ0 459 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 SMIM10L2AP0DMW4 78 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 SMIM10L2BP0DMW5 78 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 HOXD10P28358 340 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 SERPINB3P29508 390 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 ACTR3P61158 418 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 MFSD10Q14728 455 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 IZUMO3Q5VZ72 239 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 CCSAPQ6IQ19 270 aaPredicted RBP11.59□□□□□ -0.55
CUX1-204ENST00000393824 SLC39A4Q6P5W5 647 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 RHPN2Q8IUC4 686 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 LINC01465Q8N7H1 131 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 FAM81BQ96LP2 452 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 TSPYL2Q9H2G4 693 aaPredicted RBP11.59□□□□□ -0.55
CUX1-204ENST00000393824 MINDY3Q9H8M7 445 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 GPAMQ9HCL2 828 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 NDE1Q9NXR1 346 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 PTTG2Q9NZH5 202 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 LOXHD1Q8IVV2 1947 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 A0A0G2JND7 137 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 POC1B-GALNT4F8VUJ3 575 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 HAS3O00219 553 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 HNRNPRO43390 633 aaKnown RBP11.59□□□□□ -0.55
CUX1-204ENST00000393824 BUD23O43709 281 aaKnown RBP11.59□□□□□ -0.55
CUX1-204ENST00000393824 ADSSP30520 456 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 CPT1AP50416 773 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 VAMP7P51809 220 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 GTF2BQ00403 316 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 SULT2A1Q06520 285 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 PTP4A2Q12974 167 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 DMP1Q13316 513 aaPredicted RBP11.59□□□□□ -0.55
CUX1-204ENST00000393824 MFSD4BQ5TF39 518 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 TMCO4Q5TGY1 634 aa11.59□□□□□ -0.55
CUX1-204ENST00000393824 KLC3Q6P597 504 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms