RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 NOMO1Q15155 1222 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 SH3PXD2AQ5TCZ1 1133 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 C1orf228Q6PIY5 440 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 FNIP1Q8TF40 1166 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 LRRN4Q8WUT4 740 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 TTC1Q99614 292 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 C20orf27Q9GZN8 174 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 POPDC2Q9HBU9 364 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.04■□□□□ 0.321e-9■□□□□ 9.4
SDC4-201ENST00000372733 PCMTD2Q9NV79 361 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 SLC7A8Q9UHI5 535 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 KCNG1Q9UIX4 513 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 PPM1HQ9ULR3 514 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 PPME1Q9Y570 386 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 SPECC1L-ADORA2AF8WAN1 911 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 CIB2O75838 187 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 KRT37O76014 449 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 TRUB2O95900 331 aaKnown RBP17.04■□□□□ 0.32
SDC4-201ENST00000372733 SNRPAP09012 282 aaKnown RBP17.04■□□□□ 0.32
SDC4-201ENST00000372733 ZCCHC18P0CG32 403 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 CDH6P55285 790 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 UBAP2LQ14157 1087 aaKnown RBP17.04■□□□□ 0.32
SDC4-201ENST00000372733 ZCCHC23Q6ZST2 131 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 NET1Q7Z628 596 aaPredicted RBP17.04■□□□□ 0.32
SDC4-201ENST00000372733 FGD4Q96M96 766 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 WWP1Q9H0M0 922 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 XYLT2Q9H1B5 865 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 ZC3H7BQ9UGR2 993 aaKnown RBP17.04■□□□□ 0.32
SDC4-201ENST00000372733 TAGLN3Q9UI15 199 aa17.04■□□□□ 0.32
SDC4-201ENST00000372733 TRPC5Q9UL62 973 aaPredicted RBP17.04■□□□□ 0.32
SDC4-201ENST00000372733 PRR5-ARHGAP8B1AHC4 643 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 SPATA31C2B4DYI2 1134 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 WNT10BO00744 389 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 ADCY3O60266 1144 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 SPAG6O75602 509 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 RFPL1O75677 317 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 TM7SF2O76062 418 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 BAG2O95816 211 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 CDH8P55286 799 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 ARHGAP8P85298 464 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 DUOXA2Q1HG44 320 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 TRMT5Q32P41 509 aaKnown RBP17.03■□□□□ 0.32
SDC4-201ENST00000372733 ANGEL2Q5VTE6 544 aaKnown RBP17.03■□□□□ 0.32
SDC4-201ENST00000372733 KRT27Q7Z3Y8 459 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 TRAPPC9Q96Q05 1148 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 TRIM4Q9C037 500 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 NDE1Q9NXR1 346 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 SIRPGQ9P1W8 387 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 HBS1LQ9Y450 684 aaKnown RBP17.03■□□□□ 0.32
SDC4-201ENST00000372733 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.03■□□□□ 0.32
SDC4-201ENST00000372733 F8W8V4 182 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 CHADO15335 359 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 CSH1P0DML2 217 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 CSH2P0DML3 217 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 AP3M2P53677 418 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 OSTNP61366 133 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 C1orf146Q5VVC0 180 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 ATG16L1Q676U5 607 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 MYLK4Q86YV6 388 aaPredicted RBP17.03■□□□□ 0.32
SDC4-201ENST00000372733 NUDCD3Q8IVD9 361 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 EBF4Q9BQW3 602 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 RSAD1Q9HA92 442 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 HMGXB4Q9UGU5 601 aa17.03■□□□□ 0.32
SDC4-201ENST00000372733 MAFBQ9Y5Q3 323 aaPredicted RBP17.03■□□□□ 0.32
SDC4-201ENST00000372733 KCNN4O15554 427 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 LYNP07948 512 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 ACTR3P61158 418 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 KCNN1Q92952 543 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 CDHR1Q96JP9 859 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 RILPQ96NA2 401 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 TMEM134Q9H6X4 195 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 PNPLA8Q9NP80 782 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 CPSF2Q9P2I0 782 aaKnown RBP17.02■□□□□ 0.32
SDC4-201ENST00000372733 PIK3R2O00459 728 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 RNF8O76064 485 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 CCNFP41002 786 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 IRX4P78413 519 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 DSG1Q02413 1049 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 MTBPQ96DY7 904 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 GBP5Q96PP8 586 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 TWNKQ96RR1 684 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 TUBGCP5Q96RT8 1024 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 ECSITQ9BQ95 431 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 CCDC106Q9BWC9 280 aa17.02■□□□□ 0.32
SDC4-201ENST00000372733 ASCC2Q9H1I8 757 aaPredicted RBP17.02■□□□□ 0.32
SDC4-201ENST00000372733 HOXC6P09630 235 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 STIP1P31948 543 aaKnown RBP17.01■□□□□ 0.31
SDC4-201ENST00000372733 FSTL1Q12841 308 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 CDC16Q13042 620 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 FAM102AQ5T9C2 384 aaPredicted RBP17.01■□□□□ 0.31
SDC4-201ENST00000372733 C6orf163Q5TEZ5 329 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 TRMT10BQ6PF06 316 aaKnown RBP17.01■□□□□ 0.31
SDC4-201ENST00000372733 CYP4V2Q6ZWL3 525 aaPredicted RBP17.01■□□□□ 0.31
SDC4-201ENST00000372733 CAND1Q86VP6 1230 aaKnown RBP17.01■□□□□ 0.31
SDC4-201ENST00000372733 CRLF3Q8IUI8 442 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 TRIM42Q8IWZ5 723 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 LHX5Q9H2C1 402 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 DDX43Q9NXZ2 648 aaKnown RBP17.01■□□□□ 0.31
SDC4-201ENST00000372733 MSCO60682 206 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 TOM1L1O75674 476 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms