RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	PDR15	Q04182	1529 aa	Known RBP	4.58	□□□□□ -1.68
NUP85	YJR042W	YBL029C-A	Q3E756	94 aa		4.58	□□□□□ -1.68
NUP85	YJR042W	LSO1	Q3E827	93 aa		4.58	□□□□□ -1.68
NUP85	YJR042W	ERR1	P0CX10	437 aa		4.57	□□□□□ -1.68
NUP85	YJR042W	ERR2	P0CX11	437 aa		4.57	□□□□□ -1.68
NUP85	YJR042W	CYC8	P14922	966 aa		4.57	□□□□□ -1.68
NUP85	YJR042W	YPP1	P46951	817 aa		4.57	□□□□□ -1.68
NUP85	YJR042W	YPR084W	Q06821	456 aa		4.57	□□□□□ -1.68
NUP85	YJR042W	ULS1	Q08562	1619 aa		4.57	□□□□□ -1.68
NUP85	YJR042W	CRP1	P38845	465 aa	Known RBP	4.57	□□□□□ -1.68
NUP85	YJR042W	NOC2	P39744	710 aa	Known RBP	4.57	□□□□□ -1.68
NUP85	YJR042W	ATH1	P48016	1211 aa		4.57	□□□□□ -1.68
NUP85	YJR042W	CEF1	Q03654	590 aa	Predicted RBP	4.57	□□□□□ -1.68
NUP85	YJR042W	TRS120	Q04183	1289 aa		4.57	□□□□□ -1.68
NUP85	YJR042W	GRE2	Q12068	342 aa	Known RBP	4.57	□□□□□ -1.68
NUP85	YJR042W	MPH2	P0CD99	609 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	MPH3	P0CE00	602 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	TAF13	P11747	167 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	TRM1	P15565	570 aa	Known RBP	4.56	□□□□□ -1.68
NUP85	YJR042W	DUT1	P33317	147 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	RTT106	P40161	455 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	MSH4	P40965	878 aa	Predicted RBP	4.56	□□□□□ -1.68
NUP85	YJR042W	RMD1	Q03441	430 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	ENT2	Q05785	613 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	DPS1	P04802	557 aa	Known RBP	4.56	□□□□□ -1.68
NUP85	YJR042W	FUR4	P05316	633 aa	Known RBP	4.56	□□□□□ -1.68
NUP85	YJR042W	PHO8	P11491	566 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	SNF7	P39929	240 aa	Known RBP	4.56	□□□□□ -1.68
NUP85	YJR042W	FAA4	P47912	694 aa	Known RBP	4.56	□□□□□ -1.68
NUP85	YJR042W	YGR021W	P53212	290 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	PUN1	Q06991	263 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	ERP4	Q12450	207 aa		4.56	□□□□□ -1.68
NUP85	YJR042W	GEA1	P47102	1408 aa	Predicted RBP	4.55	□□□□□ -1.68
NUP85	YJR042W	RAD4	P14736	754 aa		4.55	□□□□□ -1.68
NUP85	YJR042W	SRM1	P21827	482 aa		4.55	□□□□□ -1.68
NUP85	YJR042W	MRC1	P25588	1096 aa		4.55	□□□□□ -1.68
NUP85	YJR042W	FAF1	P40546	346 aa	Predicted RBP	4.55	□□□□□ -1.68
NUP85	YJR042W	PIB1	Q06651	286 aa		4.55	□□□□□ -1.68
NUP85	YJR042W	NOP14	Q99207	810 aa	Known RBP	4.55	□□□□□ -1.68
NUP85	YJR042W	RPL8A	P17076	256 aa	Known RBP	4.54	□□□□□ -1.68
NUP85	YJR042W	HAP4	P14064	554 aa		4.54	□□□□□ -1.68
NUP85	YJR042W	CLN2	P20438	545 aa		4.54	□□□□□ -1.68
NUP85	YJR042W	SLY41	P22215	453 aa		4.54	□□□□□ -1.68
NUP85	YJR042W	MAL31	P38156	614 aa		4.54	□□□□□ -1.68
NUP85	YJR042W	BDP1	P46678	594 aa		4.54	□□□□□ -1.68
NUP85	YJR042W	TUB4	P53378	473 aa		4.54	□□□□□ -1.68
NUP85	YJR042W	UTP14	Q04500	899 aa	Known RBP	4.54	□□□□□ -1.68
NUP85	YJR042W	SSM4	P40318	1319 aa		4.54	□□□□□ -1.68
NUP85	YJR042W	RPS0A	P32905	252 aa	Known RBP	4.53	□□□□□ -1.68
NUP85	YJR042W	STE5	P32917	917 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	FAA3	P39002	694 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	SPF1	P39986	1215 aa	Known RBP	4.53	□□□□□ -1.68
NUP85	YJR042W	VID27	P40157	782 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	YJL171C	P46992	396 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	YGR122W	P53272	402 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	SPP1	Q03012	353 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	SLX4	Q12098	748 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	YOR131C	Q12486	218 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	TMA17	Q12513	150 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	CIT1	P00890	479 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	RPB10	P22139	70 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	GPG1	P53130	126 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	ATG16	Q03818	150 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	PSK2	Q08217	1101 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	APC11	Q12157	165 aa		4.53	□□□□□ -1.68
NUP85	YJR042W	TY1B-JR2	P47100	1755 aa	Known RBP	4.52	□□□□□ -1.69
NUP85	YJR042W	TY1B-ER2	Q03619	1755 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	TY1B-MR1	Q04214	1755 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	TY1B-MR2	Q04670	1755 aa	Known RBP	4.52	□□□□□ -1.69
NUP85	YJR042W	TY1B-LR1	Q12088	1755 aa	Known RBP	4.52	□□□□□ -1.69
NUP85	YJR042W	TY1B-NL1	Q12112	1755 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	TY1B-GR1	Q12141	1755 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	TY1B-BL	Q12490	1755 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	VTH1	P40438	1549 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	VTH2	P40890	1549 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	HXK1	P04806	485 aa	Known RBP	4.52	□□□□□ -1.69
NUP85	YJR042W	PRI2	P20457	528 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	RPN12	P32496	274 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	MNR2	P35724	969 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	SLI15	P38283	698 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	YGR053C	P53234	283 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	ESF2	P53743	316 aa	Known RBP	4.52	□□□□□ -1.69
NUP85	YJR042W	FOX2	Q02207	900 aa	Known RBP	4.52	□□□□□ -1.69
NUP85	YJR042W	MTC5	Q03897	1148 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	SPO20	Q04359	397 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	FRA1	Q07825	749 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	YRR1	Q12172	810 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	WSC3	Q12215	556 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	TSC11	P40061	1430 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	ADR1	P07248	1323 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	MST1	P07236	462 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	PET112	P33893	541 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	HAL5	P38970	855 aa	Known RBP	4.52	□□□□□ -1.69
NUP85	YJR042W	RSP5	P39940	809 aa	Known RBP	4.52	□□□□□ -1.69
NUP85	YJR042W	GTT3	P39996	337 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	TYW3	P53177	273 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	SND1	Q04007	877 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	CSC1	Q06538	782 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	ERF2	Q06551	359 aa		4.52	□□□□□ -1.69
NUP85	YJR042W	ENV9	Q08651	330 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 9.3 ms