RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	PGM2	P37012	569 aa	Known RBP	7.53	□□□□□ -1.2
SHE9	YDR393W	GAL2	P13181	574 aa		7.52	□□□□□ -1.21
SHE9	YDR393W	KAP122	P32767	1081 aa		7.52	□□□□□ -1.21
SHE9	YDR393W	NCL1	P38205	684 aa	Known RBP	7.52	□□□□□ -1.21
SHE9	YDR393W	ALG14	P38242	237 aa		7.52	□□□□□ -1.21
SHE9	YDR393W	TPS3	P38426	1054 aa	Known RBP	7.52	□□□□□ -1.21
SHE9	YDR393W	NHA1	Q99271	985 aa		7.52	□□□□□ -1.21
SHE9	YDR393W	RPC31	P17890	251 aa		7.5	□□□□□ -1.21
SHE9	YDR393W	YNR040W	P53736	256 aa		7.5	□□□□□ -1.21
SHE9	YDR393W	NAR1	P23503	491 aa	Known RBP	7.49	□□□□□ -1.21
SHE9	YDR393W	APM2	P38700	605 aa		7.48	□□□□□ -1.21
SHE9	YDR393W	BUD9	P53226	547 aa		7.48	□□□□□ -1.21
SHE9	YDR393W	GIS4	Q04233	774 aa		7.48	□□□□□ -1.21
SHE9	YDR393W	YPL034W	Q03083	165 aa		7.47	□□□□□ -1.21
SHE9	YDR393W	QDR2	P40474	542 aa		7.46	□□□□□ -1.21
SHE9	YDR393W	VAN1	P23642	535 aa		7.46	□□□□□ -1.22
SHE9	YDR393W	TGL4	P36165	910 aa		7.46	□□□□□ -1.22
SHE9	YDR393W	SUV3	P32580	737 aa		7.45	□□□□□ -1.22
SHE9	YDR393W	CAB1	Q04430	367 aa		7.45	□□□□□ -1.22
SHE9	YDR393W	TTI1	P36097	1038 aa		7.44	□□□□□ -1.22
SHE9	YDR393W	MRP10	O75012	95 aa		7.43	□□□□□ -1.22
SHE9	YDR393W	LEO1	P38439	464 aa		7.43	□□□□□ -1.22
SHE9	YDR393W	IDI1	P15496	288 aa		7.42	□□□□□ -1.22
SHE9	YDR393W	ECM23	Q02710	187 aa		7.42	□□□□□ -1.22
SHE9	YDR393W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	7.41	□□□□□ -1.22	RIP-Chip
SHE9	YDR393W	ITC1	P53125	1264 aa		7.41	□□□□□ -1.22
SHE9	YDR393W	TRS33	Q99394	268 aa		7.41	□□□□□ -1.22
SHE9	YDR393W	AI3	P03877	415 aa		7.4	□□□□□ -1.22
SHE9	YDR393W	CWH41	P53008	833 aa		7.4	□□□□□ -1.22
SHE9	YDR393W	GAS5	Q08193	484 aa		7.4	□□□□□ -1.22
SHE9	YDR393W	GLT1	Q12680	2145 aa	Known RBP	7.4	□□□□□ -1.22
SHE9	YDR393W	MRPL33	P20084	86 aa		7.38	□□□□□ -1.23
SHE9	YDR393W	VMA3	P25515	160 aa		7.38	□□□□□ -1.23
SHE9	YDR393W	RRM3	P38766	723 aa		7.38	□□□□□ -1.23
SHE9	YDR393W	YER156C	P40093	338 aa	Known RBP	7.38	□□□□□ -1.23
SHE9	YDR393W	FOX2	Q02207	900 aa	Known RBP	7.38	□□□□□ -1.23
SHE9	YDR393W	YOR296W	Q08748	1289 aa		7.38	□□□□□ -1.23
SHE9	YDR393W	MAC1	P35192	417 aa		7.36	□□□□□ -1.23
SHE9	YDR393W	UBX7	P38349	436 aa		7.36	□□□□□ -1.23
SHE9	YDR393W	ALO1	P54783	526 aa	Known RBP	7.36	□□□□□ -1.23
SHE9	YDR393W	PGM1	P33401	570 aa	Known RBP	7.35	□□□□□ -1.23
SHE9	YDR393W	BSD2	P38356	321 aa		7.35	□□□□□ -1.23
SHE9	YDR393W	SAC7	P17121	654 aa		7.34	□□□□□ -1.23
SHE9	YDR393W	YBR197C	P38306	217 aa		7.34	□□□□□ -1.23
SHE9	YDR393W	DYS1	P38791	387 aa		7.34	□□□□□ -1.23
SHE9	YDR393W	DMA2	P53924	522 aa		7.33	□□□□□ -1.24
SHE9	YDR393W	CPS1	P27614	576 aa		7.33	□□□□□ -1.24
SHE9	YDR393W	SFA1	P32771	386 aa		7.33	□□□□□ -1.24
SHE9	YDR393W	GIP1	P38229	639 aa		7.33	□□□□□ -1.24
SHE9	YDR393W	ARI1	P53111	347 aa	Known RBP	7.33	□□□□□ -1.24
SHE9	YDR393W	SLP1	Q12232	587 aa		7.33	□□□□□ -1.24
SHE9	YDR393W	INP52	P50942	1183 aa		7.32	□□□□□ -1.24
SHE9	YDR393W	PUP1	P25043	261 aa		7.31	□□□□□ -1.24
SHE9	YDR393W	ALD4	P46367	519 aa	Known RBP	7.31	□□□□□ -1.24
SHE9	YDR393W	OMA1	P36163	345 aa		7.3	□□□□□ -1.24
SHE9	YDR393W	LDH1	P38139	375 aa		7.3	□□□□□ -1.24
SHE9	YDR393W	ISC10	P32645	267 aa		7.29	□□□□□ -1.24
SHE9	YDR393W	TED1	P40533	473 aa		7.29	□□□□□ -1.24
SHE9	YDR393W	TY4B-P	A0A0B7P3V8	1104 aa		7.27	□□□□□ -1.25
SHE9	YDR393W	ISW1	P38144	1129 aa		7.27	□□□□□ -1.25
SHE9	YDR393W	TY4A-H	Q6Q5P6	413 aa		7.27	□□□□□ -1.25
SHE9	YDR393W	GIP2	P40036	548 aa		7.26	□□□□□ -1.25
SHE9	YDR393W	RSC2	Q06488	889 aa		7.26	□□□□□ -1.25
SHE9	YDR393W	YIL165C	P40446	119 aa		7.25	□□□□□ -1.25
SHE9	YDR393W	PPT1	P53043	513 aa		7.25	□□□□□ -1.25
SHE9	YDR393W	SOK2	P53438	785 aa	Predicted RBP	7.25	□□□□□ -1.25
SHE9	YDR393W	PUF6	Q04373	656 aa	Known RBP	7.25	□□□□□ -1.25
SHE9	YDR393W	PUN1	Q06991	263 aa		7.25	□□□□□ -1.25
SHE9	YDR393W	TY1A-NL1	Q12391	440 aa	Known RBP	7.25	□□□□□ -1.25
SHE9	YDR393W	MSN1	P22148	382 aa		7.24	□□□□□ -1.25
SHE9	YDR393W	YJL181W	P46987	611 aa		7.24	□□□□□ -1.25
SHE9	YDR393W	COQ2	P32378	372 aa		7.23	□□□□□ -1.25
SHE9	YDR393W	RSC6	P25632	483 aa		7.22	□□□□□ -1.25
SHE9	YDR393W	YKR073C	P36153	106 aa		7.22	□□□□□ -1.25
SHE9	YDR393W	YLR122C	Q12312	125 aa		7.22	□□□□□ -1.25
SHE9	YDR393W	TRP3	P00937	484 aa		7.21	□□□□□ -1.25
SHE9	YDR393W	SRS2	P12954	1174 aa		7.2	□□□□□ -1.26
SHE9	YDR393W	KAE1	P36132	386 aa		7.2	□□□□□ -1.26
SHE9	YDR393W	EMG1	Q06287	252 aa	Known RBP	7.2	□□□□□ -1.26
SHE9	YDR393W	INP51	P40559	946 aa	Known RBP	7.2	□□□□□ -1.26
SHE9	YDR393W	YML083C	Q04526	418 aa		7.2	□□□□□ -1.26
SHE9	YDR393W	DSE4	P53753	1117 aa		7.19	□□□□□ -1.26
SHE9	YDR393W	CWC15	Q03772	175 aa	Known RBP	7.19	□□□□□ -1.26
SHE9	YDR393W	MED7	Q08278	222 aa		7.19	□□□□□ -1.26
SHE9	YDR393W	KTR2	P33550	425 aa		7.18	□□□□□ -1.26
SHE9	YDR393W	SAF1	P38352	637 aa		7.18	□□□□□ -1.26
SHE9	YDR393W	TFA2	P36145	328 aa		7.17	□□□□□ -1.26
SHE9	YDR393W	HXT8	P40886	569 aa		7.17	□□□□□ -1.26
SHE9	YDR393W	PAN5	P38787	379 aa		7.16	□□□□□ -1.26
SHE9	YDR393W	BIO5	P53744	561 aa	Known RBP	7.16	□□□□□ -1.26
SHE9	YDR393W	ALD3	P54114	506 aa		7.16	□□□□□ -1.26
SHE9	YDR393W	REC8	Q12188	680 aa		7.16	□□□□□ -1.26
SHE9	YDR393W	AKR1	P39010	764 aa		7.15	□□□□□ -1.26
SHE9	YDR393W	RGD2	P43556	714 aa		7.15	□□□□□ -1.26
SHE9	YDR393W	NOB1	Q08444	459 aa	Known RBP	7.15	□□□□□ -1.26
SHE9	YDR393W	NAM7	P30771	971 aa	Known RBP	7.14	□□□□□ -1.27
SHE9	YDR393W	TOS1	P38288	455 aa		7.14	□□□□□ -1.27
SHE9	YDR393W	FIR1	P40020	876 aa		7.14	□□□□□ -1.27
SHE9	YDR393W	GUP1	P53154	560 aa		7.14	□□□□□ -1.27
SHE9	YDR393W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	7.14	□□□□□ -1.27	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 34.4 ms