RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C YNR014WP53719 212 aa6.2□□□□□ -1.42
NPL4YBR170C NUT2Q06213 157 aa6.2□□□□□ -1.42
NPL4YBR170C STB3Q12427 513 aa6.2□□□□□ -1.42
NPL4YBR170C SEC8P32855 1065 aa6.19□□□□□ -1.42
NPL4YBR170C QDR1P40475 563 aa6.19□□□□□ -1.42
NPL4YBR170C ACF4P47129 309 aa6.19□□□□□ -1.42
NPL4YBR170C OYE2Q03558 400 aaKnown RBP6.19□□□□□ -1.42
NPL4YBR170C FRT1Q99332 602 aa6.19□□□□□ -1.42
NPL4YBR170C PDI1P17967 522 aaKnown RBP6.19□□□□□ -1.42
NPL4YBR170C GLO3P38682 493 aaKnown RBP6.19□□□□□ -1.42
NPL4YBR170C WTM2Q12206 467 aa6.19□□□□□ -1.42
NPL4YBR170C SLA1P32790 1244 aa6.18□□□□□ -1.42
NPL4YBR170C VAN1P23642 535 aa6.17□□□□□ -1.42
NPL4YBR170C MCX1P38323 520 aaPredicted RBP6.17□□□□□ -1.42
NPL4YBR170C SSN3P39073 555 aa6.17□□□□□ -1.42
NPL4YBR170C YJR107WP47145 328 aa6.17□□□□□ -1.42
NPL4YBR170C DAT1P13483 248 aaKnown RBP6.16□□□□□ -1.42
NPL4YBR170C MET4P32389 672 aa6.16□□□□□ -1.42
NPL4YBR170C MGE1P38523 228 aa6.16□□□□□ -1.42
NPL4YBR170C ALD4P46367 519 aaKnown RBP6.16□□□□□ -1.42
NPL4YBR170C CBC2Q08920 208 aaKnown RBP RIP-Chip data6.16□□□□□ -1.42not detected
NPL4YBR170C HAL5P38970 855 aaKnown RBP6.16□□□□□ -1.42
NPL4YBR170C NNF1P47149 201 aa6.16□□□□□ -1.42
NPL4YBR170C TRS33Q99394 268 aa6.16□□□□□ -1.42
NPL4YBR170C SUV3P32580 737 aa6.14□□□□□ -1.43
NPL4YBR170C UTR2P32623 467 aa6.14□□□□□ -1.43
NPL4YBR170C TBS1P38114 1094 aa6.14□□□□□ -1.43
NPL4YBR170C YFL034WP43564 1073 aa6.14□□□□□ -1.43
NPL4YBR170C TY1A-DR3Q12441 440 aa6.14□□□□□ -1.43
NPL4YBR170C LSO1Q3E827 93 aa6.14□□□□□ -1.43
NPL4YBR170C SPT2P06843 333 aaPredicted RBP6.13□□□□□ -1.43
NPL4YBR170C MET1P36150 593 aa6.13□□□□□ -1.43
NPL4YBR170C AIM9P40053 627 aaKnown RBP6.13□□□□□ -1.43
NPL4YBR170C ISR1Q06098 443 aaKnown RBP6.13□□□□□ -1.43
NPL4YBR170C JIP5Q06214 492 aaPredicted RBP6.13□□□□□ -1.43
NPL4YBR170C MAG2Q06436 670 aaKnown RBP6.13□□□□□ -1.43
NPL4YBR170C BRN1P38170 754 aa6.13□□□□□ -1.43
NPL4YBR170C BOI2P39969 1040 aa6.13□□□□□ -1.43
NPL4YBR170C GPM1P00950 247 aaKnown RBP6.12□□□□□ -1.43
NPL4YBR170C FPS1P23900 669 aa6.12□□□□□ -1.43
NPL4YBR170C UBP1P25037 809 aa6.12□□□□□ -1.43
NPL4YBR170C FPR4Q06205 392 aaPredicted RBP6.12□□□□□ -1.43
NPL4YBR170C HDA3Q06623 655 aa6.12□□□□□ -1.43
NPL4YBR170C BOI1P38041 980 aaKnown RBP6.11□□□□□ -1.43
NPL4YBR170C ALA1P40825 983 aaKnown RBP6.11□□□□□ -1.43
NPL4YBR170C NTH2P35172 780 aa6.11□□□□□ -1.43
NPL4YBR170C DOS2P54858 310 aa6.11□□□□□ -1.43
NPL4YBR170C MNL2Q12205 849 aa6.11□□□□□ -1.43
NPL4YBR170C SPC42P36094 363 aa6.1□□□□□ -1.43
NPL4YBR170C FYV10P40492 516 aa6.1□□□□□ -1.43
NPL4YBR170C UTP7P40055 554 aaKnown RBP6.09□□□□□ -1.43
NPL4YBR170C SPR3P41901 512 aa6.09□□□□□ -1.43
NPL4YBR170C TRS120Q04183 1289 aa6.09□□□□□ -1.43
NPL4YBR170C GPI13Q07830 1017 aa6.09□□□□□ -1.43
NPL4YBR170C YCK2P23292 546 aaKnown RBP6.08□□□□□ -1.44
NPL4YBR170C CWH41P53008 833 aa6.08□□□□□ -1.44
NPL4YBR170C CYT1P07143 309 aa6.08□□□□□ -1.44
NPL4YBR170C NGR1P32831 672 aaKnown RBP6.08□□□□□ -1.44
NPL4YBR170C YDR215CQ12240 137 aa6.08□□□□□ -1.44
NPL4YBR170C RPS6AP0CX37 236 aaKnown RBP6.07□□□□□ -1.44
NPL4YBR170C RPS6BP0CX38 236 aaPredicted RBP6.07□□□□□ -1.44
NPL4YBR170C SUM1P46676 1062 aa6.07□□□□□ -1.44
NPL4YBR170C JJJ2P46997 583 aa6.07□□□□□ -1.44
NPL4YBR170C PHO4P07270 312 aaKnown RBP6.06□□□□□ -1.44
NPL4YBR170C IRE1P32361 1115 aa6.06□□□□□ -1.44
NPL4YBR170C YBR197CP38306 217 aa6.06□□□□□ -1.44
NPL4YBR170C YOL098CQ12496 1037 aa6.06□□□□□ -1.44
NPL4YBR170C AMN1P38285 549 aaPredicted RBP6.05□□□□□ -1.44
NPL4YBR170C NMD2P38798 1089 aaKnown RBP6.05□□□□□ -1.44
NPL4YBR170C APC11Q12157 165 aa6.05□□□□□ -1.44
NPL4YBR170C MCM2P29469 868 aa6.05□□□□□ -1.44
NPL4YBR170C ISC10P32645 267 aa6.05□□□□□ -1.44
NPL4YBR170C RPT1P33299 467 aaKnown RBP6.05□□□□□ -1.44
NPL4YBR170C TAT1P38085 619 aa6.05□□□□□ -1.44
NPL4YBR170C YAF9P53930 226 aa6.05□□□□□ -1.44
NPL4YBR170C SPR28Q04921 423 aa6.05□□□□□ -1.44
NPL4YBR170C SWI5P08153 709 aa6.04□□□□□ -1.44
NPL4YBR170C KNS1P32350 737 aaPredicted RBP6.04□□□□□ -1.44
NPL4YBR170C SLN1P39928 1220 aaPredicted RBP6.04□□□□□ -1.44
NPL4YBR170C VAC8P39968 578 aa6.04□□□□□ -1.44
NPL4YBR170C LSB6P42951 607 aa6.04□□□□□ -1.44
NPL4YBR170C DAK2P43550 591 aa6.04□□□□□ -1.44
NPL4YBR170C ALD3P54114 506 aa6.04□□□□□ -1.44
NPL4YBR170C CAB1Q04430 367 aa6.04□□□□□ -1.44
NPL4YBR170C RPB10P22139 70 aa6.03□□□□□ -1.44
NPL4YBR170C MRPL16P38064 232 aa6.03□□□□□ -1.44
NPL4YBR170C ALD6P54115 500 aaKnown RBP6.03□□□□□ -1.44
NPL4YBR170C MAC1P35192 417 aa6.02□□□□□ -1.45
NPL4YBR170C UFD2P54860 961 aa6.02□□□□□ -1.45
NPL4YBR170C FOX2Q02207 900 aaKnown RBP6.02□□□□□ -1.45
NPL4YBR170C PDC5P16467 563 aaKnown RBP6.02□□□□□ -1.45
NPL4YBR170C FAR11P53917 953 aa6.02□□□□□ -1.45
NPL4YBR170C VPS16Q03308 798 aa6.02□□□□□ -1.45
NPL4YBR170C MCA1Q08601 432 aa6.02□□□□□ -1.45
NPL4YBR170C PIN2Q12057 282 aa6.02□□□□□ -1.45
NPL4YBR170C RMD1Q03441 430 aa6.01□□□□□ -1.45
NPL4YBR170C GCD6P32501 712 aaKnown RBP6□□□□□ -1.45
NPL4YBR170C KTR2P33550 425 aa6□□□□□ -1.45
NPL4YBR170C MAD1P40957 749 aa6□□□□□ -1.45
NPL4YBR170C RNH70P53331 553 aa6□□□□□ -1.45
Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms