RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TRIM26Q12899 539 aaPredicted RBP9.99□□□□□ -0.81
VPS53-212ENST00000572259 ABCC8Q09428 1581 aa9.98□□□□□ -0.81
VPS53-212ENST00000572259 CFHP08603 1231 aa9.98□□□□□ -0.81
VPS53-212ENST00000572259 KRTAP3-3Q9BYR6 98 aa9.98□□□□□ -0.81
VPS53-212ENST00000572259 KRTAP3-2Q9BYR7 98 aa9.98□□□□□ -0.81
VPS53-212ENST00000572259 KMT5BQ4FZB7 885 aa9.97□□□□□ -0.81
VPS53-212ENST00000572259 GRIPAP1Q4V328 841 aa9.97□□□□□ -0.81
VPS53-212ENST00000572259 WNT2BQ93097 391 aa9.97□□□□□ -0.81
VPS53-212ENST00000572259 MOXD2PA6NHM9 499 aa9.96□□□□□ -0.82
VPS53-212ENST00000572259 NDUFV2P19404 249 aa9.96□□□□□ -0.82
VPS53-212ENST00000572259 PPP4CP60510 307 aa9.96□□□□□ -0.82
VPS53-212ENST00000572259 CSPP1Q1MSJ5 1256 aa9.96□□□□□ -0.82
VPS53-212ENST00000572259 SOWAHBA6NEL2 793 aa9.95□□□□□ -0.82
VPS53-212ENST00000572259 SPTLC1O15269 473 aa9.95□□□□□ -0.82
VPS53-212ENST00000572259 UBTFP17480 764 aaKnown RBP9.95□□□□□ -0.82
VPS53-212ENST00000572259 RSBN1LQ6PCB5 846 aaPredicted RBP9.95□□□□□ -0.82
VPS53-212ENST00000572259 LIMD1Q9UGP4 676 aa9.95□□□□□ -0.82
VPS53-212ENST00000572259 URB2Q14146 1524 aaKnown RBP9.94□□□□□ -0.82
VPS53-212ENST00000572259 GJA5P36382 358 aa9.94□□□□□ -0.82
VPS53-212ENST00000572259 HOXA2O43364 376 aa9.93□□□□□ -0.82
VPS53-212ENST00000572259 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.93□□□□□ -0.82
VPS53-212ENST00000572259 PRR14Q9BWN1 585 aa9.93□□□□□ -0.82
VPS53-212ENST00000572259 HPS5Q9UPZ3 1129 aa9.93□□□□□ -0.82
VPS53-212ENST00000572259 FDX1P10109 184 aa9.92□□□□□ -0.82
VPS53-212ENST00000572259 ATP6V1AP38606 617 aa9.92□□□□□ -0.82
VPS53-212ENST00000572259 BCAMP50895 628 aa9.92□□□□□ -0.82
VPS53-212ENST00000572259 FUT2Q10981 343 aa9.92□□□□□ -0.82
VPS53-212ENST00000572259 TUSC1Q2TAM9 212 aa9.92□□□□□ -0.82
VPS53-212ENST00000572259 TSR3Q9UJK0 312 aaKnown RBP9.92□□□□□ -0.82
VPS53-212ENST00000572259 NUTM2BA6NNL0 878 aaPredicted RBP9.91□□□□□ -0.82
VPS53-212ENST00000572259 NUTM2EB1AL46 878 aaPredicted RBP9.91□□□□□ -0.82
VPS53-212ENST00000572259 NUTM2DQ5VT03 806 aaPredicted RBP9.91□□□□□ -0.82
VPS53-212ENST00000572259 NUTM2AQ8IVF1 878 aaPredicted RBP9.91□□□□□ -0.82
VPS53-212ENST00000572259 FLIIQ13045 1269 aa9.9□□□□□ -0.82
VPS53-212ENST00000572259 PCDHB15Q9Y5E8 787 aa9.9□□□□□ -0.82
VPS53-212ENST00000572259 TOPBP1Q92547 1522 aa9.9□□□□□ -0.82
VPS53-212ENST00000572259 DNMBPQ6XZF7 1577 aa9.89□□□□□ -0.83
VPS53-212ENST00000572259 TTBK1Q5TCY1 1321 aaPredicted RBP9.89□□□□□ -0.83
VPS53-212ENST00000572259 ACTN4O43707 911 aaKnown RBP9.89□□□□□ -0.83
VPS53-212ENST00000572259 KCTD12Q96CX2 325 aaKnown RBP9.89□□□□□ -0.83
VPS53-212ENST00000572259 IFT140Q96RY7 1462 aa9.88□□□□□ -0.83
VPS53-212ENST00000572259 RFC5P40937 340 aa9.88□□□□□ -0.83
VPS53-212ENST00000572259 GUCA2AQ02747 115 aa9.88□□□□□ -0.83
VPS53-212ENST00000572259 PRPF38BQ5VTL8 546 aaKnown RBP9.88□□□□□ -0.83
VPS53-212ENST00000572259 ZBTB3Q9H5J0 574 aa9.88□□□□□ -0.83
VPS53-212ENST00000572259 HLA-CQ95604 372 aa9.87□□□□□ -0.83
VPS53-212ENST00000572259 LILRB3O75022 631 aa9.86□□□□□ -0.83
VPS53-212ENST00000572259 QPCTQ16769 361 aa9.86□□□□□ -0.83
VPS53-212ENST00000572259 TMEM259Q4ZIN3 620 aa9.86□□□□□ -0.83
VPS53-212ENST00000572259 PPP2R2DQ66LE6 453 aa9.86□□□□□ -0.83
VPS53-212ENST00000572259 CABLES1Q8TDN4 633 aa9.86□□□□□ -0.83
VPS53-212ENST00000572259 C6orf229H3BNL8 230 aa9.85□□□□□ -0.83
VPS53-212ENST00000572259 MYT1Q01538 1121 aa9.85□□□□□ -0.83
VPS53-212ENST00000572259 MTMR2Q13614 643 aa9.85□□□□□ -0.83
VPS53-212ENST00000572259 PUS10Q3MIT2 529 aaKnown RBP9.85□□□□□ -0.83
VPS53-212ENST00000572259 THSD4Q6ZMP0 1018 aa9.85□□□□□ -0.83
VPS53-212ENST00000572259 WBP1LQ9NX94 342 aa9.85□□□□□ -0.83
VPS53-212ENST00000572259 PCDHGC3Q9UN70 934 aa9.85□□□□□ -0.83
VPS53-212ENST00000572259 HRCP23327 699 aa9.84□□□□□ -0.83
VPS53-212ENST00000572259 APLP1P51693 650 aa9.84□□□□□ -0.83
VPS53-212ENST00000572259 RTL5Q5HYW3 569 aaPredicted RBP9.84□□□□□ -0.83
VPS53-212ENST00000572259 PCDHB3Q9Y5E6 796 aa9.84□□□□□ -0.83
VPS53-212ENST00000572259 Q3C1V9 767 aa9.83□□□□□ -0.84
VPS53-212ENST00000572259 MORN1Q5T089 497 aa9.83□□□□□ -0.84
VPS53-212ENST00000572259 SOGA1O94964 1423 aa9.82□□□□□ -0.84
VPS53-212ENST00000572259 SPDYE5A6NIY4 337 aa9.82□□□□□ -0.84
VPS53-212ENST00000572259 AP1G2O75843 785 aa9.82□□□□□ -0.84
VPS53-212ENST00000572259 FBXO31Q5XUX0 539 aaPredicted RBP9.82□□□□□ -0.84
VPS53-212ENST00000572259 BANK1Q8NDB2 785 aa9.82□□□□□ -0.84
VPS53-212ENST00000572259 SLC27A5Q9Y2P5 690 aa9.82□□□□□ -0.84
VPS53-212ENST00000572259 POLA1P09884 1462 aaPredicted RBP9.81□□□□□ -0.84
VPS53-212ENST00000572259 PTPN5P54829 565 aa9.81□□□□□ -0.84
VPS53-212ENST00000572259 TSC1Q92574 1164 aa9.81□□□□□ -0.84
VPS53-212ENST00000572259 NR1I2O75469 434 aa9.8□□□□□ -0.84
VPS53-212ENST00000572259 ZMYND15Q9H091 742 aa9.8□□□□□ -0.84
VPS53-212ENST00000572259 CUX1P39880 1505 aa9.79□□□□□ -0.84
VPS53-212ENST00000572259 NYAP1Q6ZVC0 841 aa9.79□□□□□ -0.84
VPS53-212ENST00000572259 SYMPKQ92797 1274 aaKnown RBP9.79□□□□□ -0.84
VPS53-212ENST00000572259 MYT1LQ9UL68 1186 aa9.79□□□□□ -0.84
VPS53-212ENST00000572259 FGD5Q6ZNL6 1462 aa9.79□□□□□ -0.84
VPS53-212ENST00000572259 MCM6Q14566 821 aa9.78□□□□□ -0.84
VPS53-212ENST00000572259 HELBQ8NG08 1087 aaPredicted RBP9.78□□□□□ -0.84
VPS53-212ENST00000572259 ZNF608Q9ULD9 1512 aaPredicted RBP9.77□□□□□ -0.84
VPS53-212ENST00000572259 WRNQ14191 1432 aaPredicted RBP eCLIP9.77□□□□□ -0.85
VPS53-212ENST00000572259 BLOC1S3Q6QNY0 202 aa9.77□□□□□ -0.85
VPS53-212ENST00000572259 SCUBE3Q8IX30 993 aa9.77□□□□□ -0.85
VPS53-212ENST00000572259 TARBP1Q13395 1621 aaKnown RBP9.77□□□□□ -0.85
VPS53-212ENST00000572259 FMNL1O95466 1100 aaPredicted RBP9.76□□□□□ -0.85
VPS53-212ENST00000572259 COPS2P61201 443 aa9.76□□□□□ -0.85
VPS53-212ENST00000572259 RETREG3Q86VR2 466 aa9.76□□□□□ -0.85
VPS53-212ENST00000572259 SNRKQ9NRH2 765 aa9.76□□□□□ -0.85
VPS53-212ENST00000572259 RAD54L2Q9Y4B4 1467 aa9.76□□□□□ -0.85
VPS53-212ENST00000572259 WDR97A6NE52 1622 aa9.75□□□□□ -0.85
VPS53-212ENST00000572259 AQRO60306 1485 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS53-212ENST00000572259 APBB1O00213 710 aa9.75□□□□□ -0.85
VPS53-212ENST00000572259 RAD21O60216 631 aa9.75□□□□□ -0.85
VPS53-212ENST00000572259 PRR7Q8TB68 274 aa9.75□□□□□ -0.85
VPS53-212ENST00000572259 CCDC9Q9Y3X0 531 aaKnown RBP9.75□□□□□ -0.85
VPS53-212ENST00000572259 SALL2Q9Y467 1007 aaPredicted RBP9.75□□□□□ -0.85
VPS53-212ENST00000572259 TDRD9Q8NDG6 1382 aaKnown RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms