RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 CUX1P39880 1505 aa10.08□□□□□ -0.8
SYNE2-220ENST00000555612 IFT140Q96RY7 1462 aa10.08□□□□□ -0.8
SYNE2-220ENST00000555612 POGZQ7Z3K3 1410 aa10.08□□□□□ -0.8
SYNE2-220ENST00000555612 TRIM29Q14134 588 aa10.08□□□□□ -0.8
SYNE2-220ENST00000555612 KIF6Q6ZMV9 814 aa10.08□□□□□ -0.8
SYNE2-220ENST00000555612 CPLX1O14810 134 aa10.07□□□□□ -0.8
SYNE2-220ENST00000555612 STAC3Q96MF2 364 aa10.07□□□□□ -0.8
SYNE2-220ENST00000555612 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.07□□□□□ -0.8
SYNE2-220ENST00000555612 CNKSR2Q8WXI2 1034 aa10.07□□□□□ -0.8
SYNE2-220ENST00000555612 MTMR7Q9Y216 660 aa10.07□□□□□ -0.8
SYNE2-220ENST00000555612 ZKSCAN1P17029 563 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-220ENST00000555612 DDX19BQ9UMR2 479 aa10.07□□□□□ -0.8
SYNE2-220ENST00000555612 WASHC4Q2M389 1173 aa10.07□□□□□ -0.8
SYNE2-220ENST00000555612 PRDM11Q9NQV5 511 aa10.07□□□□□ -0.8
SYNE2-220ENST00000555612 ERICH2A1L162 156 aa10.06□□□□□ -0.8
SYNE2-220ENST00000555612 DZIP1LQ8IYY4 767 aaKnown RBP10.06□□□□□ -0.8
SYNE2-220ENST00000555612 SMG6Q86US8 1419 aaKnown RBP10.06□□□□□ -0.8
SYNE2-220ENST00000555612 CCDC43Q96MW1 224 aaKnown RBP10.06□□□□□ -0.8
SYNE2-220ENST00000555612 CHMP4CQ96CF2 233 aa10.06□□□□□ -0.8
SYNE2-220ENST00000555612 CC2D2AQ9P2K1 1620 aa10.06□□□□□ -0.8
SYNE2-220ENST00000555612 NCOA2Q15596 1464 aa10.06□□□□□ -0.8
SYNE2-220ENST00000555612 CRBNQ96SW2 442 aa10.06□□□□□ -0.8
SYNE2-220ENST00000555612 ROCK1Q13464 1354 aa10.06□□□□□ -0.8
SYNE2-220ENST00000555612 SNAPC4Q5SXM2 1469 aa10.05□□□□□ -0.8
SYNE2-220ENST00000555612 FYCO1Q9BQS8 1478 aa10.05□□□□□ -0.8
SYNE2-220ENST00000555612 GAS2L2Q8NHY3 880 aa10.05□□□□□ -0.8
SYNE2-220ENST00000555612 CABP4P57796 275 aa10.05□□□□□ -0.8
SYNE2-220ENST00000555612 UBTFL1P0CB47 393 aaPredicted RBP10.04□□□□□ -0.8
SYNE2-220ENST00000555612 IKQ13123 557 aaPredicted RBP10.04□□□□□ -0.8
SYNE2-220ENST00000555612 MTHFSP49914 203 aa10.04□□□□□ -0.8
SYNE2-220ENST00000555612 KRI1Q8N9T8 703 aaKnown RBP10.04□□□□□ -0.8
SYNE2-220ENST00000555612 CDK19Q9BWU1 502 aa10.04□□□□□ -0.8
SYNE2-220ENST00000555612 HSP90AB4PQ58FF6 505 aa10.04□□□□□ -0.8
SYNE2-220ENST00000555612 EXOC6Q8TAG9 804 aa10.04□□□□□ -0.8
SYNE2-220ENST00000555612 ZNF428Q96B54 188 aa10.03□□□□□ -0.8
SYNE2-220ENST00000555612 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.03□□□□□ -0.8
SYNE2-220ENST00000555612 A0A0U1RQG5 324 aaPredicted RBP10.03□□□□□ -0.8
SYNE2-220ENST00000555612 SLC4A3P48751 1232 aa10.03□□□□□ -0.8
SYNE2-220ENST00000555612 CENPQQ7L2Z9 268 aaPredicted RBP10.03□□□□□ -0.8
SYNE2-220ENST00000555612 FANCIQ9NVI1 1328 aa10.03□□□□□ -0.8
SYNE2-220ENST00000555612 TPM3P06753 285 aa10.03□□□□□ -0.8
SYNE2-220ENST00000555612 CCAR1Q8IX12 1150 aaKnown RBP10.03□□□□□ -0.8
SYNE2-220ENST00000555612 CABP1Q9NZU7 370 aa10.03□□□□□ -0.8
SYNE2-220ENST00000555612 LRRC9Q6ZRR7 1453 aa10.03□□□□□ -0.8
SYNE2-220ENST00000555612 RRP1P56182 461 aaKnown RBP10.03□□□□□ -0.8
SYNE2-220ENST00000555612 RNF20Q5VTR2 975 aa10.03□□□□□ -0.8
SYNE2-220ENST00000555612 MAP3K1Q13233 1512 aa10.02□□□□□ -0.8
SYNE2-220ENST00000555612 CASKIN1Q8WXD9 1431 aa10.02□□□□□ -0.8
SYNE2-220ENST00000555612 PRKAR2BP31323 418 aa10.02□□□□□ -0.8
SYNE2-220ENST00000555612 FOSBP53539 338 aa10.02□□□□□ -0.8
SYNE2-220ENST00000555612 DNMBPQ6XZF7 1577 aa10.02□□□□□ -0.81
SYNE2-220ENST00000555612 ARAP1Q96P48 1450 aa10.02□□□□□ -0.81
SYNE2-220ENST00000555612 ERC2O15083 957 aa10.02□□□□□ -0.81
SYNE2-220ENST00000555612 SYNJ1O43426 1573 aa10.02□□□□□ -0.81
SYNE2-220ENST00000555612 REC8O95072 547 aa10.02□□□□□ -0.81
SYNE2-220ENST00000555612 ZNF530Q6P9A1 599 aaPredicted RBP10.02□□□□□ -0.81
SYNE2-220ENST00000555612 SLC52A1Q9NWF4 448 aa10.01□□□□□ -0.81
SYNE2-220ENST00000555612 TPM2P07951 284 aa10.01□□□□□ -0.81
SYNE2-220ENST00000555612 ZC3H6P61129 1189 aaKnown RBP10.01□□□□□ -0.81
SYNE2-220ENST00000555612 RALYLQ86SE5 291 aaKnown RBP10.01□□□□□ -0.81
SYNE2-220ENST00000555612 CCDC30Q5VVM6 783 aa10.01□□□□□ -0.81
SYNE2-220ENST00000555612 SPG7Q9UQ90 795 aa10.01□□□□□ -0.81
SYNE2-220ENST00000555612 BIVM-ERCC5R4GMW8 1640 aa10.01□□□□□ -0.81
SYNE2-220ENST00000555612 KIF7Q2M1P5 1343 aa10.01□□□□□ -0.81
SYNE2-220ENST00000555612 CNNM1Q9NRU3 951 aa10□□□□□ -0.81
SYNE2-220ENST00000555612 TSR1Q2NL82 804 aaKnown RBP10□□□□□ -0.81
SYNE2-220ENST00000555612 CCDC47Q96A33 483 aaKnown RBP10□□□□□ -0.81
SYNE2-220ENST00000555612 TOPBP1Q92547 1522 aa10□□□□□ -0.81
SYNE2-220ENST00000555612 SULT6B1Q6IMI4 303 aa10□□□□□ -0.81
SYNE2-220ENST00000555612 TBC1D2BQ9UPU7 963 aa10□□□□□ -0.81
SYNE2-220ENST00000555612 ATP6V1DQ9Y5K8 247 aa10□□□□□ -0.81
SYNE2-220ENST00000555612 KDM4AO75164 1064 aa10□□□□□ -0.81
SYNE2-220ENST00000555612 PCMTD1Q96MG8 357 aaPredicted RBP10□□□□□ -0.81
SYNE2-220ENST00000555612 DNAJC2Q99543 621 aaKnown RBP10□□□□□ -0.81
SYNE2-220ENST00000555612 RTEL1-TNFRSF6BF6WH68 1400 aa10□□□□□ -0.81
SYNE2-220ENST00000555612 C9orf84Q5VXU9 1444 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 PHF14O94880 888 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 BICDL1Q6ZP65 573 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 SLC12A5Q9H2X9 1139 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 ZNF692Q9BU19 519 aaPredicted RBP9.99□□□□□ -0.81
SYNE2-220ENST00000555612 ADAMTS2O95450 1211 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 NBPF1Q3BBV0 1214 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 PLEKHH2Q8IVE3 1493 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 FSD1Q9BTV5 496 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 LNPKQ9C0E8 428 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 ZBED9Q6R2W3 1325 aa9.99□□□□□ -0.81
SYNE2-220ENST00000555612 FAM161AQ3B820 660 aa9.98□□□□□ -0.81
SYNE2-220ENST00000555612 BECN2A8MW95 431 aa9.98□□□□□ -0.81
SYNE2-220ENST00000555612 MYL6BP14649 208 aa9.98□□□□□ -0.81
SYNE2-220ENST00000555612 GOLGA6L3A6NEY3 463 aa9.98□□□□□ -0.81
SYNE2-220ENST00000555612 SURF6O75683 361 aaKnown RBP9.98□□□□□ -0.81
SYNE2-220ENST00000555612 RBM5P52756 815 aaKnown RBP eCLIP9.98□□□□□ -0.81
SYNE2-220ENST00000555612 TCP11L2Q8N4U5 519 aa9.98□□□□□ -0.81
SYNE2-220ENST00000555612 EFCAB5A4FU69 1503 aa9.97□□□□□ -0.81
SYNE2-220ENST00000555612 POLA1P09884 1462 aaPredicted RBP9.97□□□□□ -0.81
SYNE2-220ENST00000555612 CCDC7Q96M83 1385 aa9.97□□□□□ -0.81
SYNE2-220ENST00000555612 SAFBQ15424 915 aaKnown RBP eCLIP9.97□□□□□ -0.81
SYNE2-220ENST00000555612 GOLGA6L19H0YKK7 550 aa9.97□□□□□ -0.81
SYNE2-220ENST00000555612 HDGFL1Q5TGJ6 251 aa9.97□□□□□ -0.81
SYNE2-220ENST00000555612 VPS37CA5D8V6 355 aaPredicted RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms