RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 CLUAP1Q96AJ1 413 aa11.85□□□□□ -0.51
SIX4-202ENST00000554079 MTUS2Q5JR59 1369 aa11.85□□□□□ -0.51
SIX4-202ENST00000554079 SLFN14P0C7P3 912 aa11.84□□□□□ -0.51
SIX4-202ENST00000554079 U2AF2P26368 475 aaKnown RBP eCLIP11.84□□□□□ -0.51
SIX4-202ENST00000554079 TRMT2AQ8IZ69 625 aaKnown RBP11.84□□□□□ -0.51
SIX4-202ENST00000554079 NKTRP30414 1462 aaKnown RBP11.84□□□□□ -0.51
SIX4-202ENST00000554079 KIF3AQ9Y496 699 aa11.84□□□□□ -0.51
SIX4-202ENST00000554079 ABCA10Q8WWZ4 1543 aa11.83□□□□□ -0.52
SIX4-202ENST00000554079 ZSCAN23Q3MJ62 389 aa11.83□□□□□ -0.52
SIX4-202ENST00000554079 FEZ1Q99689 392 aa11.83□□□□□ -0.52
SIX4-202ENST00000554079 DDX49Q9Y6V7 483 aaKnown RBP11.83□□□□□ -0.52
SIX4-202ENST00000554079 IGF1RP08069 1367 aa11.83□□□□□ -0.52
SIX4-202ENST00000554079 CCDC66A2RUB6 948 aa11.82□□□□□ -0.52
SIX4-202ENST00000554079 FAM177BA6PVY3 158 aa11.82□□□□□ -0.52
SIX4-202ENST00000554079 PSEN1P49768 467 aa11.82□□□□□ -0.52
SIX4-202ENST00000554079 SLFN5Q08AF3 891 aa11.82□□□□□ -0.52
SIX4-202ENST00000554079 TIGD1Q96MW7 591 aa11.82□□□□□ -0.52
SIX4-202ENST00000554079 YY1AP1Q9H869 796 aa11.82□□□□□ -0.52
SIX4-202ENST00000554079 OGFRQ9NZT2 677 aa11.82□□□□□ -0.52
SIX4-202ENST00000554079 ATP1B4Q9UN42 357 aaPredicted RBP11.82□□□□□ -0.52
SIX4-202ENST00000554079 PDZRN3Q9UPQ7 1066 aa11.82□□□□□ -0.52
SIX4-202ENST00000554079 SOX12O15370 315 aa11.82□□□□□ -0.52
SIX4-202ENST00000554079 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.82□□□□□ -0.52
SIX4-202ENST00000554079 SSFA2P28290 1259 aa11.81□□□□□ -0.52
SIX4-202ENST00000554079 MFAP1P55081 439 aaKnown RBP11.81□□□□□ -0.52
SIX4-202ENST00000554079 GOLGA2Q08379 1002 aa11.81□□□□□ -0.52
SIX4-202ENST00000554079 PDE3AQ14432 1141 aa11.81□□□□□ -0.52
SIX4-202ENST00000554079 SLC52A1Q9NWF4 448 aa11.81□□□□□ -0.52
SIX4-202ENST00000554079 BCAR3O75815 825 aa11.81□□□□□ -0.52
SIX4-202ENST00000554079 BAG4O95429 457 aaKnown RBP11.81□□□□□ -0.52
SIX4-202ENST00000554079 PRIM1P49642 420 aaKnown RBP11.81□□□□□ -0.52
SIX4-202ENST00000554079 GRIN2BQ13224 1484 aa11.8□□□□□ -0.52
SIX4-202ENST00000554079 GOLGA6L22H0YM25 854 aa11.8□□□□□ -0.52
SIX4-202ENST00000554079 PER1O15534 1290 aaPredicted RBP11.8□□□□□ -0.52
SIX4-202ENST00000554079 FBLN2P98095 1184 aa11.8□□□□□ -0.52
SIX4-202ENST00000554079 AEBP1Q8IUX7 1158 aa11.8□□□□□ -0.52
SIX4-202ENST00000554079 PIBF1Q8WXW3 757 aa11.8□□□□□ -0.52
SIX4-202ENST00000554079 PZPP20742 1482 aa11.79□□□□□ -0.52
SIX4-202ENST00000554079 TRIM6-TRIM34B2RNG4 842 aa11.79□□□□□ -0.52
SIX4-202ENST00000554079 P3H3Q8IVL6 736 aa11.79□□□□□ -0.52
SIX4-202ENST00000554079 TRIM34Q9BYJ4 488 aa11.79□□□□□ -0.52
SIX4-202ENST00000554079 CHIC2Q9UKJ5 165 aa11.79□□□□□ -0.52
SIX4-202ENST00000554079 CARMIL1Q5VZK9 1371 aa11.79□□□□□ -0.52
SIX4-202ENST00000554079 CAVIN1Q6NZI2 390 aaKnown RBP11.79□□□□□ -0.52
SIX4-202ENST00000554079 NGEFQ8N5V2 710 aa11.79□□□□□ -0.52
SIX4-202ENST00000554079 PMFBP1Q8TBY8 1022 aa11.79□□□□□ -0.52
SIX4-202ENST00000554079 ANKRD30AQ9BXX3 1397 aa11.78□□□□□ -0.52
SIX4-202ENST00000554079 NPC1L1Q9UHC9 1359 aa11.78□□□□□ -0.52
SIX4-202ENST00000554079 MAGI3Q5TCQ9 1506 aa11.78□□□□□ -0.52
SIX4-202ENST00000554079 ABCC2Q92887 1545 aa11.78□□□□□ -0.52
SIX4-202ENST00000554079 SAMD1Q6SPF0 538 aaPredicted RBP11.78□□□□□ -0.52
SIX4-202ENST00000554079 TSPYL1Q9H0U9 437 aa11.78□□□□□ -0.52
SIX4-202ENST00000554079 GEMIN8Q9NWZ8 242 aaKnown RBP11.78□□□□□ -0.52
SIX4-202ENST00000554079 KCNG1Q9UIX4 513 aa11.78□□□□□ -0.52
SIX4-202ENST00000554079 ARHGEF12Q9NZN5 1544 aa11.78□□□□□ -0.52
SIX4-202ENST00000554079 FKBP5Q13451 457 aaPredicted RBP11.77□□□□□ -0.52
SIX4-202ENST00000554079 SPTLC3Q9NUV7 552 aa11.77□□□□□ -0.52
SIX4-202ENST00000554079 BCCIPQ9P287 314 aaKnown RBP eCLIP11.77□□□□□ -0.52
SIX4-202ENST00000554079 ADAMTS8Q9UP79 889 aa11.77□□□□□ -0.52
SIX4-202ENST00000554079 MAGI1Q96QZ7 1491 aaPredicted RBP11.77□□□□□ -0.52
SIX4-202ENST00000554079 CEP170Q5SW79 1584 aa11.77□□□□□ -0.53
SIX4-202ENST00000554079 CTIFO43310 598 aaKnown RBP11.77□□□□□ -0.53
SIX4-202ENST00000554079 NOLC1Q14978 699 aaKnown RBP eCLIP11.77□□□□□ -0.53
SIX4-202ENST00000554079 CHMP7Q8WUX9 453 aaPredicted RBP11.77□□□□□ -0.53
SIX4-202ENST00000554079 CAMSAP2Q08AD1 1489 aa11.77□□□□□ -0.53
SIX4-202ENST00000554079 LMBRD1Q9NUN5 540 aa11.76□□□□□ -0.53
SIX4-202ENST00000554079 CALCOCO1Q9P1Z2 691 aa11.76□□□□□ -0.53
SIX4-202ENST00000554079 TERF2Q15554 542 aa11.76□□□□□ -0.53
SIX4-202ENST00000554079 LRSAM1Q6UWE0 723 aa11.76□□□□□ -0.53
SIX4-202ENST00000554079 PANK1Q8TE04 598 aa11.76□□□□□ -0.53
SIX4-202ENST00000554079 ZBTB9Q96C00 473 aa11.76□□□□□ -0.53
SIX4-202ENST00000554079 HDAC5Q9UQL6 1122 aa11.76□□□□□ -0.53
SIX4-202ENST00000554079 COG6Q9Y2V7 657 aa11.76□□□□□ -0.53
SIX4-202ENST00000554079 PCDHB15Q9Y5E8 787 aa11.76□□□□□ -0.53
SIX4-202ENST00000554079 ST20-MTHFSA0A0A6YYL1 179 aa11.75□□□□□ -0.53
SIX4-202ENST00000554079 CHMP4CQ96CF2 233 aa11.75□□□□□ -0.53
SIX4-202ENST00000554079 CTNNA3Q9UI47 895 aa11.75□□□□□ -0.53
SIX4-202ENST00000554079 SAMD9Q5K651 1589 aa11.75□□□□□ -0.53
SIX4-202ENST00000554079 PBRM1Q86U86 1689 aa11.75□□□□□ -0.53
SIX4-202ENST00000554079 DNMT1P26358 1616 aaKnown RBP11.74□□□□□ -0.53
SIX4-202ENST00000554079 TRPM1Q7Z4N2 1603 aa11.74□□□□□ -0.53
SIX4-202ENST00000554079 CLGNO14967 610 aa11.74□□□□□ -0.53
SIX4-202ENST00000554079 EFCC1Q9HA90 598 aa11.74□□□□□ -0.53
SIX4-202ENST00000554079 SPINK5Q9NQ38 1064 aaPredicted RBP11.74□□□□□ -0.53
SIX4-202ENST00000554079 FEZ2Q9UHY8 353 aaPredicted RBP11.74□□□□□ -0.53
SIX4-202ENST00000554079 DDX41Q9UJV9 622 aaKnown RBP11.74□□□□□ -0.53
SIX4-202ENST00000554079 ZBTB7CA1YPR0 619 aa11.74□□□□□ -0.53
SIX4-202ENST00000554079 ROCK1Q13464 1354 aa11.74□□□□□ -0.53
SIX4-202ENST00000554079 COL17A1Q9UMD9 1497 aaPredicted RBP11.73□□□□□ -0.53
SIX4-202ENST00000554079 CD2BP2O95400 341 aaKnown RBP11.73□□□□□ -0.53
SIX4-202ENST00000554079 KIF2CQ99661 725 aa11.73□□□□□ -0.53
SIX4-202ENST00000554079 MORC2Q9Y6X9 1032 aaPredicted RBP11.73□□□□□ -0.53
SIX4-202ENST00000554079 RIOK3O14730 519 aaKnown RBP11.72□□□□□ -0.53
SIX4-202ENST00000554079 MYCNP04198 464 aaPredicted RBP11.72□□□□□ -0.53
SIX4-202ENST00000554079 PTMAP06454 111 aaKnown RBP11.72□□□□□ -0.53
SIX4-202ENST00000554079 CARD11Q9BXL7 1154 aa11.72□□□□□ -0.53
SIX4-202ENST00000554079 RBM27Q9P2N5 1060 aaKnown RBP11.72□□□□□ -0.53
SIX4-202ENST00000554079 SYNJ2O15056 1496 aa11.72□□□□□ -0.53
SIX4-202ENST00000554079 CHD1O14646 1710 aa11.72□□□□□ -0.53
SIX4-202ENST00000554079 ITSN2Q9NZM3 1697 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms