RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 TRIM6-TRIM34B2RNG4 842 aa8.48□□□□□ -1.05
CHMP4A-210ENST00000552620 NUDT18Q6ZVK8 323 aa8.48□□□□□ -1.05
CHMP4A-210ENST00000552620 TBC1D2Q9BYX2 928 aa8.48□□□□□ -1.05
CHMP4A-210ENST00000552620 FAM198AQ9UFP1 575 aa8.48□□□□□ -1.05
CHMP4A-210ENST00000552620 TSKSQ9UJT2 592 aa8.48□□□□□ -1.05
CHMP4A-210ENST00000552620 PNMA3Q9UL41 463 aa8.48□□□□□ -1.05
CHMP4A-210ENST00000552620 RAD54L2Q9Y4B4 1467 aa8.48□□□□□ -1.05
CHMP4A-210ENST00000552620 PROCA1Q8NCQ7 364 aaPredicted RBP8.47□□□□□ -1.05
CHMP4A-210ENST00000552620 TATDN2Q93075 761 aa8.47□□□□□ -1.05
CHMP4A-210ENST00000552620 PCF11O94913 1555 aaKnown RBP8.47□□□□□ -1.05
CHMP4A-210ENST00000552620 PPP1R15AO75807 674 aaPredicted RBP8.46□□□□□ -1.06
CHMP4A-210ENST00000552620 SPNS2Q8IVW8 549 aa8.46□□□□□ -1.06
CHMP4A-210ENST00000552620 LAMC3Q9Y6N6 1575 aa8.46□□□□□ -1.06
CHMP4A-210ENST00000552620 FHOD3Q2V2M9 1422 aa8.46□□□□□ -1.06
CHMP4A-210ENST00000552620 MCM6Q14566 821 aa8.45□□□□□ -1.06
CHMP4A-210ENST00000552620 NUTM1Q86Y26 1132 aa8.45□□□□□ -1.06
CHMP4A-210ENST00000552620 KCNK17Q96T54 332 aa8.45□□□□□ -1.06
CHMP4A-210ENST00000552620 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.45□□□□□ -1.06
CHMP4A-210ENST00000552620 CTTNBP2Q8WZ74 1663 aa8.44□□□□□ -1.06
CHMP4A-210ENST00000552620 A6NJR5 290 aa8.44□□□□□ -1.06
CHMP4A-210ENST00000552620 DDX11L8A8MPP1 907 aa8.44□□□□□ -1.06
CHMP4A-210ENST00000552620 CD46P15529 392 aa8.44□□□□□ -1.06
CHMP4A-210ENST00000552620 TMEM134Q9H6X4 195 aa8.44□□□□□ -1.06
CHMP4A-210ENST00000552620 PDS5BQ9NTI5 1447 aa8.44□□□□□ -1.06
CHMP4A-210ENST00000552620 PBX2P40425 430 aa8.43□□□□□ -1.06
CHMP4A-210ENST00000552620 SPIRE2Q8WWL2 714 aa8.43□□□□□ -1.06
CHMP4A-210ENST00000552620 SIN3AQ96ST3 1273 aa8.43□□□□□ -1.06
CHMP4A-210ENST00000552620 FGD6Q6ZV73 1430 aa8.43□□□□□ -1.06
CHMP4A-210ENST00000552620 CCER2I3L3R5 266 aa8.42□□□□□ -1.06
CHMP4A-210ENST00000552620 RSPH4AQ5TD94 716 aa8.42□□□□□ -1.06
CHMP4A-210ENST00000552620 RIC3Q7Z5B4 369 aa8.42□□□□□ -1.06
CHMP4A-210ENST00000552620 MTUS2Q5JR59 1369 aa8.42□□□□□ -1.06
CHMP4A-210ENST00000552620 THOC2Q8NI27 1593 aaKnown RBP8.42□□□□□ -1.06
CHMP4A-210ENST00000552620 URB2Q14146 1524 aaKnown RBP8.41□□□□□ -1.06
CHMP4A-210ENST00000552620 GAPVD1Q14C86 1478 aa8.41□□□□□ -1.06
CHMP4A-210ENST00000552620 SNAPC4Q5SXM2 1469 aa8.41□□□□□ -1.06
CHMP4A-210ENST00000552620 RAD21O60216 631 aa8.41□□□□□ -1.06
CHMP4A-210ENST00000552620 TUSC1Q2TAM9 212 aa8.41□□□□□ -1.06
CHMP4A-210ENST00000552620 BANK1Q8NDB2 785 aa8.41□□□□□ -1.06
CHMP4A-210ENST00000552620 WDR97A6NE52 1622 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 SAMD9Q5K651 1589 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 HFM1A2PYH4 1435 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 SPDYE5A6NIY4 337 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 RFC5P40937 340 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 PROX2Q3B8N5 592 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 TMEM259Q4ZIN3 620 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 POTEEQ6S8J3 1075 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 RDH13Q8NBN7 331 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 CLUAP1Q96AJ1 413 aa8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 SUPT16HQ9Y5B9 1047 aaKnown RBP8.4□□□□□ -1.06
CHMP4A-210ENST00000552620 NESP48681 1621 aa8.4□□□□□ -1.07
CHMP4A-210ENST00000552620 ABCA5Q8WWZ7 1642 aa8.4□□□□□ -1.07
CHMP4A-210ENST00000552620 GRIN2BQ13224 1484 aa8.39□□□□□ -1.07
CHMP4A-210ENST00000552620 UACAQ9BZF9 1416 aa8.39□□□□□ -1.07
CHMP4A-210ENST00000552620 C3orf80F5H4A9 247 aa8.39□□□□□ -1.07
CHMP4A-210ENST00000552620 SMAPO00193 183 aa8.39□□□□□ -1.07
CHMP4A-210ENST00000552620 ARHGAP33O14559 1287 aa8.39□□□□□ -1.07
CHMP4A-210ENST00000552620 SPTLC1O15269 473 aa8.39□□□□□ -1.07
CHMP4A-210ENST00000552620 MMRN1Q13201 1228 aa8.39□□□□□ -1.07
CHMP4A-210ENST00000552620 LIMD1Q9UGP4 676 aa8.39□□□□□ -1.07
CHMP4A-210ENST00000552620 AXIN2Q9Y2T1 843 aa8.39□□□□□ -1.07
CHMP4A-210ENST00000552620 MYOM3Q5VTT5 1437 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 TONSLQ96HA7 1378 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 APBB1O00213 710 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 ANP32CO43423 234 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 GJA5P36382 358 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 SLC4A3P48751 1232 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 LSM11P83369 360 aaKnown RBP eCLIP8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 DDX10Q13206 875 aaKnown RBP8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 PPP2R2DQ66LE6 453 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 RSBN1LQ6PCB5 846 aaPredicted RBP8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 ANKRD13DQ6ZTN6 518 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 ZBED2Q9BTP6 218 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 KIAA1468Q9P260 1216 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 CCDC18Q5T9S5 1454 aa8.38□□□□□ -1.07
CHMP4A-210ENST00000552620 TDRD9Q8NDG6 1382 aaKnown RBP8.37□□□□□ -1.07
CHMP4A-210ENST00000552620 TRAK2O60296 914 aa8.37□□□□□ -1.07
CHMP4A-210ENST00000552620 HDGFP51858 240 aaKnown RBP8.37□□□□□ -1.07
CHMP4A-210ENST00000552620 EHBP1L1Q8N3D4 1523 aa8.37□□□□□ -1.07
CHMP4A-210ENST00000552620 NCOA2Q15596 1464 aa8.37□□□□□ -1.07
CHMP4A-210ENST00000552620 KDM4AO75164 1064 aa8.36□□□□□ -1.07
CHMP4A-210ENST00000552620 USP46P62068 366 aa8.36□□□□□ -1.07
CHMP4A-210ENST00000552620 PROSER2Q86WR7 435 aaPredicted RBP8.36□□□□□ -1.07
CHMP4A-210ENST00000552620 ARID3AQ99856 593 aa8.36□□□□□ -1.07
CHMP4A-210ENST00000552620 RABGEF1Q9UJ41 708 aa8.36□□□□□ -1.07
CHMP4A-210ENST00000552620 SUPT6HQ7KZ85 1726 aaKnown RBP8.36□□□□□ -1.07
CHMP4A-210ENST00000552620 NAIPQ13075 1403 aa8.36□□□□□ -1.07
CHMP4A-210ENST00000552620 ARHGEF11O15085 1522 aa8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 KIF21AQ7Z4S6 1674 aa8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 TCOF1Q13428 1488 aaKnown RBP8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 MOXD2PA6NHM9 499 aa8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 ARID3CA6NKF2 412 aa8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 CSPP1Q1MSJ5 1256 aa8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 SLC4A5Q9BY07 1137 aa8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 PTPN23Q9H3S7 1636 aa8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 PTPRKQ15262 1439 aa8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 AKNAQ7Z591 1439 aa8.35□□□□□ -1.07
CHMP4A-210ENST00000552620 PSEN2P49810 448 aa8.34□□□□□ -1.07
CHMP4A-210ENST00000552620 C1orf115Q9H7X2 142 aa8.34□□□□□ -1.07
CHMP4A-210ENST00000552620 MIA2Q96PC5 1412 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms