RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 HPS5Q9UPZ3 1129 aa8.1□□□□□ -1.11
PCF11-205ENST00000530906 ADCY10Q96PN6 1610 aa8.1□□□□□ -1.11
PCF11-205ENST00000530906 MAGI3Q5TCQ9 1506 aa8.09□□□□□ -1.11
PCF11-205ENST00000530906 GCC2Q8IWJ2 1684 aa8.09□□□□□ -1.11
PCF11-205ENST00000530906 ITSN2Q9NZM3 1697 aa8.09□□□□□ -1.11
PCF11-205ENST00000530906 NUP153P49790 1475 aaKnown RBP8.09□□□□□ -1.11
PCF11-205ENST00000530906 CFAP44Q96MT7 982 aa8.09□□□□□ -1.11
PCF11-205ENST00000530906 GRXCR2A6NFK2 248 aa8.08□□□□□ -1.12
PCF11-205ENST00000530906 OSBPP22059 807 aa8.08□□□□□ -1.12
PCF11-205ENST00000530906 KCNC4Q03721 635 aa8.08□□□□□ -1.12
PCF11-205ENST00000530906 DIEXFQ68CQ4 756 aaKnown RBP8.08□□□□□ -1.12
PCF11-205ENST00000530906 CERKQ8TCT0 537 aa8.08□□□□□ -1.12
PCF11-205ENST00000530906 IRX2Q9BZI1 471 aaPredicted RBP8.08□□□□□ -1.12
PCF11-205ENST00000530906 MAPKBP1O60336 1514 aa8.08□□□□□ -1.12
PCF11-205ENST00000530906 TROQ12816 1431 aaPredicted RBP8.07□□□□□ -1.12
PCF11-205ENST00000530906 UACAQ9BZF9 1416 aa8.07□□□□□ -1.12
PCF11-205ENST00000530906 WDR70Q9NW82 654 aa8.07□□□□□ -1.12
PCF11-205ENST00000530906 CDK13Q14004 1512 aaKnown RBP8.07□□□□□ -1.12
PCF11-205ENST00000530906 SMAPO00193 183 aa8.06□□□□□ -1.12
PCF11-205ENST00000530906 ROCK1Q13464 1354 aa8.06□□□□□ -1.12
PCF11-205ENST00000530906 ABCA8O94911 1581 aa8.05□□□□□ -1.12
PCF11-205ENST00000530906 NAIPQ13075 1403 aa8.05□□□□□ -1.12
PCF11-205ENST00000530906 ITGAEP38570 1179 aa8.05□□□□□ -1.12
PCF11-205ENST00000530906 SAMD7Q7Z3H4 446 aa8.05□□□□□ -1.12
PCF11-205ENST00000530906 TATDN2Q93075 761 aa8.05□□□□□ -1.12
PCF11-205ENST00000530906 CDHR5Q9HBB8 845 aa8.05□□□□□ -1.12
PCF11-205ENST00000530906 DNMT1P26358 1616 aaKnown RBP8.04□□□□□ -1.12
PCF11-205ENST00000530906 SHROOM2Q13796 1616 aa8.04□□□□□ -1.12
PCF11-205ENST00000530906 PPP4CP60510 307 aa8.04□□□□□ -1.12
PCF11-205ENST00000530906 NBPF26B4DH59 902 aa8.02□□□□□ -1.13
PCF11-205ENST00000530906 TJAP1Q5JTD0 557 aa8.02□□□□□ -1.13
PCF11-205ENST00000530906 NPDC1Q9NQX5 325 aaPredicted RBP8.02□□□□□ -1.13
PCF11-205ENST00000530906 RBM27Q9P2N5 1060 aaKnown RBP8.02□□□□□ -1.13
PCF11-205ENST00000530906 PNMA3Q9UL41 463 aa8.02□□□□□ -1.13
PCF11-205ENST00000530906 KIF14Q15058 1648 aa8.02□□□□□ -1.13
PCF11-205ENST00000530906 PTPRKQ15262 1439 aa8.02□□□□□ -1.13
PCF11-205ENST00000530906 CHD1O14646 1710 aa8.01□□□□□ -1.13
PCF11-205ENST00000530906 TTC13Q8NBP0 860 aa8.01□□□□□ -1.13
PCF11-205ENST00000530906 PLB1Q6P1J6 1458 aa8□□□□□ -1.13
PCF11-205ENST00000530906 ADGBQ8N7X0 1667 aa8□□□□□ -1.13
PCF11-205ENST00000530906 NUDT18Q6ZVK8 323 aa8□□□□□ -1.13
PCF11-205ENST00000530906 DAPK1P53355 1430 aa8□□□□□ -1.13
PCF11-205ENST00000530906 ADGRL2O95490 1459 aa8□□□□□ -1.13
PCF11-205ENST00000530906 SHANK2Q9UPX8 1470 aa8□□□□□ -1.13
PCF11-205ENST00000530906 CROCC2H7BZ55 1655 aa7.98□□□□□ -1.13
PCF11-205ENST00000530906 PTPRGP23470 1445 aa7.98□□□□□ -1.13
PCF11-205ENST00000530906 PRG4Q92954 1404 aaPredicted RBP7.98□□□□□ -1.13
PCF11-205ENST00000530906 CENPBP07199 599 aaPredicted RBP7.98□□□□□ -1.13
PCF11-205ENST00000530906 GPATCH8Q9UKJ3 1502 aaKnown RBP7.98□□□□□ -1.13
PCF11-205ENST00000530906 PADI6Q6TGC4 694 aa7.97□□□□□ -1.13
PCF11-205ENST00000530906 MTRQ99707 1265 aa7.97□□□□□ -1.13
PCF11-205ENST00000530906 ATP10BO94823 1461 aa7.97□□□□□ -1.13
PCF11-205ENST00000530906 CAMSAP2Q08AD1 1489 aa7.97□□□□□ -1.13
PCF11-205ENST00000530906 ABCC10Q5T3U5 1492 aa7.97□□□□□ -1.13
PCF11-205ENST00000530906 ABCC5O15440 1437 aa7.96□□□□□ -1.13
PCF11-205ENST00000530906 CDC42BPAQ5VT25 1732 aa7.96□□□□□ -1.14
PCF11-205ENST00000530906 PLEKHD1A6NEE1 506 aa7.96□□□□□ -1.14
PCF11-205ENST00000530906 ARHGEF5Q12774 1597 aa7.96□□□□□ -1.14
PCF11-205ENST00000530906 TONSLQ96HA7 1378 aa7.96□□□□□ -1.14
PCF11-205ENST00000530906 CLASP1Q7Z460 1538 aa7.95□□□□□ -1.14
PCF11-205ENST00000530906 ABCC2Q92887 1545 aa7.95□□□□□ -1.14
PCF11-205ENST00000530906 APLP1P51693 650 aa7.95□□□□□ -1.14
PCF11-205ENST00000530906 IL21Q9HBE4 155 aa7.95□□□□□ -1.14
PCF11-205ENST00000530906 TSHZ2Q9NRE2 1034 aa7.95□□□□□ -1.14
PCF11-205ENST00000530906 CFDP1Q9UEE9 299 aaPredicted RBP7.95□□□□□ -1.14
PCF11-205ENST00000530906 UHRF1BP1LA0JNW5 1464 aa7.94□□□□□ -1.14
PCF11-205ENST00000530906 PREX2Q70Z35 1606 aa7.94□□□□□ -1.14
PCF11-205ENST00000530906 RSPH4AQ5TD94 716 aa7.94□□□□□ -1.14
PCF11-205ENST00000530906 ZNF516Q92618 1163 aa7.94□□□□□ -1.14
PCF11-205ENST00000530906 ARHGEF1Q92888 912 aaKnown RBP7.94□□□□□ -1.14
PCF11-205ENST00000530906 ANKRD30AQ9BXX3 1397 aa7.94□□□□□ -1.14
PCF11-205ENST00000530906 PLEKHH2Q8IVE3 1493 aa7.94□□□□□ -1.14
PCF11-205ENST00000530906 PPP1R15AO75807 674 aaPredicted RBP7.93□□□□□ -1.14
PCF11-205ENST00000530906 MLLT3P42568 568 aaPredicted RBP7.93□□□□□ -1.14
PCF11-205ENST00000530906 HDGFP51858 240 aaKnown RBP7.93□□□□□ -1.14
PCF11-205ENST00000530906 EYA1Q99502 592 aa7.93□□□□□ -1.14
PCF11-205ENST00000530906 NCOA1Q15788 1441 aa7.93□□□□□ -1.14
PCF11-205ENST00000530906 SWT1Q5T5J6 900 aaKnown RBP7.92□□□□□ -1.14
PCF11-205ENST00000530906 PPP1R18Q6NYC8 613 aa7.92□□□□□ -1.14
PCF11-205ENST00000530906 RNF40O75150 1001 aa7.91□□□□□ -1.14
PCF11-205ENST00000530906 KCNV2Q8TDN2 545 aa7.91□□□□□ -1.14
PCF11-205ENST00000530906 KDM5DQ9BY66 1539 aa7.91□□□□□ -1.14
PCF11-205ENST00000530906 MAST1Q9Y2H9 1570 aa7.91□□□□□ -1.14
PCF11-205ENST00000530906 ARAP3Q8WWN8 1544 aa7.9□□□□□ -1.14
PCF11-205ENST00000530906 RPRD2Q5VT52 1461 aaKnown RBP7.9□□□□□ -1.14
PCF11-205ENST00000530906 Q6ZNB5 142 aa7.9□□□□□ -1.14
PCF11-205ENST00000530906 RRP7BPQ9NSQ0 103 aa7.9□□□□□ -1.14
PCF11-205ENST00000530906 MYO5CQ9NQX4 1742 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 KDM6BO15054 1643 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 KDM5BQ9UGL1 1544 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 CCDC141Q6ZP82 1450 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 KIAA1107Q9UPP5 1409 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 LCE2BO14633 110 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 SLF2Q8IX21 1173 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 NKX2-3Q8TAU0 364 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 MPHOSPH9Q99550 1183 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 PRKD2Q9BZL6 878 aa7.89□□□□□ -1.15
PCF11-205ENST00000530906 DENND4BO75064 1496 aaPredicted RBP7.88□□□□□ -1.15
PCF11-205ENST00000530906 C9orf84Q5VXU9 1444 aa7.88□□□□□ -1.15
PCF11-205ENST00000530906 PTGDRQ13258 359 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms