RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 DNMBPQ6XZF7 1577 aa7.67□□□□□ -1.18
CSMD3-205ENST00000462254 URB2Q14146 1524 aaKnown RBP7.66□□□□□ -1.18
CSMD3-205ENST00000462254 ACTN4O43707 911 aaKnown RBP7.65□□□□□ -1.18
CSMD3-205ENST00000462254 FUT2Q10981 343 aa7.65□□□□□ -1.18
CSMD3-205ENST00000462254 PUS10Q3MIT2 529 aaKnown RBP7.65□□□□□ -1.18
CSMD3-205ENST00000462254 NYAP1Q6ZVC0 841 aa7.65□□□□□ -1.18
CSMD3-205ENST00000462254 NECTIN2Q92692 538 aa7.65□□□□□ -1.18
CSMD3-205ENST00000462254 WDR97A6NE52 1622 aa7.64□□□□□ -1.19
CSMD3-205ENST00000462254 TOPBP1Q92547 1522 aa7.64□□□□□ -1.19
CSMD3-205ENST00000462254 KDM4AO75164 1064 aa7.64□□□□□ -1.19
CSMD3-205ENST00000462254 KMT5BQ4FZB7 885 aa7.64□□□□□ -1.19
CSMD3-205ENST00000462254 SPIRE2Q8WWL2 714 aa7.64□□□□□ -1.19
CSMD3-205ENST00000462254 HLA-CQ95604 372 aa7.64□□□□□ -1.19
CSMD3-205ENST00000462254 PLEKHG3A1L390 1219 aa7.63□□□□□ -1.19
CSMD3-205ENST00000462254 IL27Q8NEV9 243 aa7.63□□□□□ -1.19
CSMD3-205ENST00000462254 WDR62O43379 1518 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 ERCC6Q03468 1493 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 MRC2Q9UBG0 1479 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 COPS2P61201 443 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 TJAP1Q5JTD0 557 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 BLOC1S3Q6QNY0 202 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 NUTM1Q86Y26 1132 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 MTRQ99707 1265 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 PRR14Q9BWN1 585 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 TBC1D2Q9BYX2 928 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 PCDHB3Q9Y5E6 796 aa7.62□□□□□ -1.19
CSMD3-205ENST00000462254 HRCP23327 699 aa7.61□□□□□ -1.19
CSMD3-205ENST00000462254 ATP6V1AP38606 617 aa7.61□□□□□ -1.19
CSMD3-205ENST00000462254 GUCA2AQ02747 115 aa7.61□□□□□ -1.19
CSMD3-205ENST00000462254 ZNF516Q92618 1163 aa7.61□□□□□ -1.19
CSMD3-205ENST00000462254 FGD5Q6ZNL6 1462 aa7.61□□□□□ -1.19
CSMD3-205ENST00000462254 MOXD2PA6NHM9 499 aa7.6□□□□□ -1.19
CSMD3-205ENST00000462254 HOXA2O43364 376 aa7.6□□□□□ -1.19
CSMD3-205ENST00000462254 NDUFV2P19404 249 aa7.6□□□□□ -1.19
CSMD3-205ENST00000462254 MORN1Q5T089 497 aa7.6□□□□□ -1.19
CSMD3-205ENST00000462254 ZMYND15Q9H091 742 aa7.6□□□□□ -1.19
CSMD3-205ENST00000462254 SCUBE3Q8IX30 993 aa7.59□□□□□ -1.19
CSMD3-205ENST00000462254 DDRGK1Q96HY6 314 aa7.59□□□□□ -1.19
CSMD3-205ENST00000462254 RSPH6AQ9H0K4 717 aa7.59□□□□□ -1.19
CSMD3-205ENST00000462254 SLC27A5Q9Y2P5 690 aa7.59□□□□□ -1.19
CSMD3-205ENST00000462254 POLA1P09884 1462 aaPredicted RBP7.59□□□□□ -1.19
CSMD3-205ENST00000462254 TARBP1Q13395 1621 aaKnown RBP7.59□□□□□ -1.19
CSMD3-205ENST00000462254 USP46P62068 366 aa7.58□□□□□ -1.2
CSMD3-205ENST00000462254 MYSM1Q5VVJ2 828 aa7.58□□□□□ -1.2
CSMD3-205ENST00000462254 ITGBL1O95965 494 aaPredicted RBP7.57□□□□□ -1.2
CSMD3-205ENST00000462254 PCDHGC3Q9UN70 934 aa7.57□□□□□ -1.2
CSMD3-205ENST00000462254 TLL1O43897 1013 aa7.56□□□□□ -1.2
CSMD3-205ENST00000462254 ZPR1O75312 459 aa7.56□□□□□ -1.2
CSMD3-205ENST00000462254 GRIPAP1Q4V328 841 aa7.56□□□□□ -1.2
CSMD3-205ENST00000462254 NKX2-3Q8TAU0 364 aa7.56□□□□□ -1.2
CSMD3-205ENST00000462254 IL21Q9HBE4 155 aa7.56□□□□□ -1.2
CSMD3-205ENST00000462254 POLR3EQ9NVU0 708 aa7.56□□□□□ -1.2
CSMD3-205ENST00000462254 PBRM1Q86U86 1689 aa7.55□□□□□ -1.2
CSMD3-205ENST00000462254 NR1I2O75469 434 aa7.55□□□□□ -1.2
CSMD3-205ENST00000462254 KCNC4Q03721 635 aa7.55□□□□□ -1.2
CSMD3-205ENST00000462254 RSBN1LQ6PCB5 846 aaPredicted RBP7.55□□□□□ -1.2
CSMD3-205ENST00000462254 RIC3Q7Z5B4 369 aa7.55□□□□□ -1.2
CSMD3-205ENST00000462254 SYMPKQ92797 1274 aaKnown RBP7.55□□□□□ -1.2
CSMD3-205ENST00000462254 PLA2G2EQ9NZK7 142 aa7.55□□□□□ -1.2
CSMD3-205ENST00000462254 LIMD1Q9UGP4 676 aa7.55□□□□□ -1.2
CSMD3-205ENST00000462254 PCDHB15Q9Y5E8 787 aa7.55□□□□□ -1.2
CSMD3-205ENST00000462254 CUX2O14529 1486 aa7.55□□□□□ -1.2
CSMD3-205ENST00000462254 RAD54L2Q9Y4B4 1467 aa7.55□□□□□ -1.2
CSMD3-205ENST00000462254 RUSC2Q8N2Y8 1516 aa7.54□□□□□ -1.2
CSMD3-205ENST00000462254 ABCA5Q8WWZ7 1642 aa7.54□□□□□ -1.2
CSMD3-205ENST00000462254 SPTLC1O15269 473 aa7.54□□□□□ -1.2
CSMD3-205ENST00000462254 FDX1P10109 184 aa7.54□□□□□ -1.2
CSMD3-205ENST00000462254 DIXDC1Q155Q3 683 aa7.54□□□□□ -1.2
CSMD3-205ENST00000462254 RNF19BQ6ZMZ0 732 aa7.54□□□□□ -1.2
CSMD3-205ENST00000462254 THAP11Q96EK4 314 aa7.54□□□□□ -1.2
CSMD3-205ENST00000462254 SOGA1O94964 1423 aa7.53□□□□□ -1.2
CSMD3-205ENST00000462254 ABCA10Q8WWZ4 1543 aa7.53□□□□□ -1.2
CSMD3-205ENST00000462254 PROCA1Q8NCQ7 364 aaPredicted RBP7.53□□□□□ -1.2
CSMD3-205ENST00000462254 SKIV2LQ15477 1246 aaKnown RBP7.52□□□□□ -1.21
CSMD3-205ENST00000462254 CSPP1Q1MSJ5 1256 aa7.52□□□□□ -1.21
CSMD3-205ENST00000462254 SH3D19Q5HYK7 790 aa7.52□□□□□ -1.21
CSMD3-205ENST00000462254 BRICD5Q6PL45 260 aa7.52□□□□□ -1.21
CSMD3-205ENST00000462254 EIF4G3O43432 1585 aaKnown RBP7.51□□□□□ -1.21
CSMD3-205ENST00000462254 GJA5P36382 358 aa7.51□□□□□ -1.21
CSMD3-205ENST00000462254 CLK2P49760 499 aaKnown RBP7.51□□□□□ -1.21
CSMD3-205ENST00000462254 QPCTQ16769 361 aa7.51□□□□□ -1.21
CSMD3-205ENST00000462254 FBXO31Q5XUX0 539 aaPredicted RBP7.51□□□□□ -1.21
CSMD3-205ENST00000462254 FAM160A2Q8N612 972 aaPredicted RBP7.51□□□□□ -1.21
CSMD3-205ENST00000462254 SPSB2Q99619 263 aa7.51□□□□□ -1.21
CSMD3-205ENST00000462254 FMNL1O95466 1100 aaPredicted RBP7.5□□□□□ -1.21
CSMD3-205ENST00000462254 CABLES1Q8TDN4 633 aa7.5□□□□□ -1.21
CSMD3-205ENST00000462254 SALL2Q9Y467 1007 aaPredicted RBP7.5□□□□□ -1.21
CSMD3-205ENST00000462254 IFT140Q96RY7 1462 aa7.49□□□□□ -1.21
CSMD3-205ENST00000462254 C6orf229H3BNL8 230 aa7.49□□□□□ -1.21
CSMD3-205ENST00000462254 ADH1BP00325 375 aa7.49□□□□□ -1.21
CSMD3-205ENST00000462254 Q3C1V9 767 aa7.49□□□□□ -1.21
CSMD3-205ENST00000462254 IFFO2Q5TF58 517 aa7.48□□□□□ -1.21
CSMD3-205ENST00000462254 GOPCQ9HD26 462 aa7.48□□□□□ -1.21
CSMD3-205ENST00000462254 PRDM9Q9NQV7 894 aa7.48□□□□□ -1.21
CSMD3-205ENST00000462254 CUL7Q14999 1698 aa7.47□□□□□ -1.21
CSMD3-205ENST00000462254 ZNF608Q9ULD9 1512 aaPredicted RBP7.47□□□□□ -1.21
CSMD3-205ENST00000462254 EEA1Q15075 1411 aa7.47□□□□□ -1.21
CSMD3-205ENST00000462254 LILRB3O75022 631 aa7.47□□□□□ -1.21
CSMD3-205ENST00000462254 S1PR4O95977 384 aa7.47□□□□□ -1.21
CSMD3-205ENST00000462254 MTMR2Q13614 643 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms