RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 AEBP2Q6ZN18 517 aaPredicted RBP18.65■□□□□ 0.58
CSMD3-205ENST00000462254 CHIC1Q5VXU3 224 aa18.15■□□□□ 0.5
CSMD3-205ENST00000462254 PHF23Q9BUL5 403 aaPredicted RBP16.03■□□□□ 0.16
CSMD3-205ENST00000462254 SENP3Q9H4L4 574 aaPredicted RBP15.73■□□□□ 0.11
CSMD3-205ENST00000462254 PLPPR3Q6T4P5 718 aa14.72□□□□□ -0.05
CSMD3-205ENST00000462254 FOXD1Q16676 465 aa14.66□□□□□ -0.06
CSMD3-205ENST00000462254 PPP6R1Q9UPN7 881 aa14.16□□□□□ -0.14
CSMD3-205ENST00000462254 ADRA2BP18089 450 aa14.13□□□□□ -0.15
CSMD3-205ENST00000462254 PIAS4Q8N2W9 510 aaPredicted RBP13.8□□□□□ -0.2
CSMD3-205ENST00000462254 MSH5O43196 834 aa13.43□□□□□ -0.26
CSMD3-205ENST00000462254 PPP4R3CPQ6ZMV5 832 aa13.01□□□□□ -0.33
CSMD3-205ENST00000462254 MAPK8IP2Q13387 824 aaPredicted RBP12.84□□□□□ -0.35
CSMD3-205ENST00000462254 SCAF1Q9H7N4 1312 aaKnown RBP12.82□□□□□ -0.36
CSMD3-205ENST00000462254 KCNA4P22459 653 aa12.76□□□□□ -0.37
CSMD3-205ENST00000462254 NCBP3Q53F19 620 aaKnown RBP12.61□□□□□ -0.39
CSMD3-205ENST00000462254 CNKSR2Q8WXI2 1034 aa12.61□□□□□ -0.39
CSMD3-205ENST00000462254 DMRT2Q9Y5R5 561 aa12.58□□□□□ -0.4
CSMD3-205ENST00000462254 NPM3O75607 178 aaKnown RBP12.51□□□□□ -0.41
CSMD3-205ENST00000462254 RNF216Q9NWF9 866 aaPredicted RBP12.36□□□□□ -0.43
CSMD3-205ENST00000462254 HOXD11P31277 338 aaPredicted RBP12.32□□□□□ -0.44
CSMD3-205ENST00000462254 POTEDQ86YR6 584 aa12.27□□□□□ -0.45
CSMD3-205ENST00000462254 SLC4A1APQ9BWU0 796 aaKnown RBP12.11□□□□□ -0.47
CSMD3-205ENST00000462254 DNAJC5BQ9UF47 199 aa12.07□□□□□ -0.48
CSMD3-205ENST00000462254 DCAF8L1A6NGE4 600 aa12.05□□□□□ -0.48
CSMD3-205ENST00000462254 SLC4A2P04920 1241 aa11.83□□□□□ -0.52
CSMD3-205ENST00000462254 EHMT2Q96KQ7 1210 aa11.83□□□□□ -0.52
CSMD3-205ENST00000462254 ZBTB22O15209 634 aa11.78□□□□□ -0.52
CSMD3-205ENST00000462254 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.74□□□□□ -0.53
CSMD3-205ENST00000462254 CSRNP3Q8WYN3 585 aa11.69□□□□□ -0.54
CSMD3-205ENST00000462254 FOXD4L1Q9NU39 408 aa11.67□□□□□ -0.54
CSMD3-205ENST00000462254 U3KPZ7 1027 aaPredicted RBP11.58□□□□□ -0.56
CSMD3-205ENST00000462254 RNF39Q9H2S5 420 aa11.56□□□□□ -0.56
CSMD3-205ENST00000462254 MYCNP04198 464 aaPredicted RBP11.5□□□□□ -0.57
CSMD3-205ENST00000462254 C1QBPQ07021 282 aaKnown RBP11.38□□□□□ -0.59
CSMD3-205ENST00000462254 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.34□□□□□ -0.59
CSMD3-205ENST00000462254 HNRNPUL2Q1KMD3 747 aaKnown RBP11.34□□□□□ -0.59
CSMD3-205ENST00000462254 SAMD1Q6SPF0 538 aaPredicted RBP11.33□□□□□ -0.6
CSMD3-205ENST00000462254 ATF5Q9Y2D1 282 aaPredicted RBP11.3□□□□□ -0.6
CSMD3-205ENST00000462254 SPINK5Q9NQ38 1064 aaPredicted RBP11.28□□□□□ -0.6
CSMD3-205ENST00000462254 ATXN8OSP0DMR3 200 aa11.25□□□□□ -0.61
CSMD3-205ENST00000462254 CACNB1Q02641 598 aaPredicted RBP11.24□□□□□ -0.61
CSMD3-205ENST00000462254 CAPN15O75808 1086 aa11.19□□□□□ -0.62
CSMD3-205ENST00000462254 APLP2Q06481 763 aa11.19□□□□□ -0.62
CSMD3-205ENST00000462254 TRHP20396 242 aaPredicted RBP11.16□□□□□ -0.62
CSMD3-205ENST00000462254 ZNF219Q9P2Y4 722 aaPredicted RBP11.09□□□□□ -0.63
CSMD3-205ENST00000462254 ABCB7O75027 752 aa11.01□□□□□ -0.65
CSMD3-205ENST00000462254 DSG3P32926 999 aa11.01□□□□□ -0.65
CSMD3-205ENST00000462254 POLA2Q14181 598 aa10.99□□□□□ -0.65
CSMD3-205ENST00000462254 MKRN4PQ13434 485 aaPredicted RBP10.78□□□□□ -0.68
CSMD3-205ENST00000462254 ZBTB12Q9Y330 459 aaPredicted RBP10.71□□□□□ -0.69
CSMD3-205ENST00000462254 FBLN2P98095 1184 aa10.7□□□□□ -0.7
CSMD3-205ENST00000462254 OSCARQ8IYS5 282 aa10.61□□□□□ -0.71
CSMD3-205ENST00000462254 NISCHQ9Y2I1 1504 aa10.61□□□□□ -0.71
CSMD3-205ENST00000462254 FKBP8Q14318 412 aa10.54□□□□□ -0.72
CSMD3-205ENST00000462254 SPDYE4A6NLX3 237 aa10.5□□□□□ -0.73
CSMD3-205ENST00000462254 SPDYE2BA6NHP3 402 aa10.46□□□□□ -0.73
CSMD3-205ENST00000462254 SPDYE6P0CI01 402 aa10.46□□□□□ -0.73
CSMD3-205ENST00000462254 SPDYE2Q495Y8 402 aa10.46□□□□□ -0.73
CSMD3-205ENST00000462254 ZNF692Q9BU19 519 aaPredicted RBP10.46□□□□□ -0.73
CSMD3-205ENST00000462254 RBM42Q9BTD8 480 aaKnown RBP10.41□□□□□ -0.74
CSMD3-205ENST00000462254 SSUH2Q9Y2M2 353 aa10.41□□□□□ -0.74
CSMD3-205ENST00000462254 PABPN1Q86U42 306 aaKnown RBP eCLIP10.33□□□□□ -0.76
CSMD3-205ENST00000462254 PROM2Q8N271 834 aa10.33□□□□□ -0.76
CSMD3-205ENST00000462254 AKT1S1Q96B36 256 aa10.32□□□□□ -0.76
CSMD3-205ENST00000462254 REM2Q8IYK8 340 aaPredicted RBP10.27□□□□□ -0.77
CSMD3-205ENST00000462254 PITPNM1O00562 1244 aa10.16□□□□□ -0.78
CSMD3-205ENST00000462254 SPDYE1Q8NFV5 336 aaPredicted RBP10.14□□□□□ -0.79
CSMD3-205ENST00000462254 CLEC11AQ9Y240 323 aa10.14□□□□□ -0.79
CSMD3-205ENST00000462254 SLC24A1O60721 1099 aa10.13□□□□□ -0.79
CSMD3-205ENST00000462254 FBXO3Q9UK99 471 aa10.1□□□□□ -0.79
CSMD3-205ENST00000462254 STAG3Q9UJ98 1225 aa10.08□□□□□ -0.8
CSMD3-205ENST00000462254 PRR29P0C7W0 189 aa10.03□□□□□ -0.8
CSMD3-205ENST00000462254 CHRDL2Q6WN34 429 aa10.03□□□□□ -0.8
CSMD3-205ENST00000462254 VASPP50552 380 aaPredicted RBP10□□□□□ -0.81
CSMD3-205ENST00000462254 MIER1Q8N108 512 aa9.96□□□□□ -0.82
CSMD3-205ENST00000462254 FXR2P51116 673 aaKnown RBP eCLIP9.94□□□□□ -0.82
CSMD3-205ENST00000462254 CREBZFQ9NS37 354 aa9.94□□□□□ -0.82
CSMD3-205ENST00000462254 CHADLQ6NUI6 762 aa9.93□□□□□ -0.82
CSMD3-205ENST00000462254 PLCD3Q8N3E9 789 aa9.93□□□□□ -0.82
CSMD3-205ENST00000462254 PIP4P2Q8N4L2 257 aa9.93□□□□□ -0.82
CSMD3-205ENST00000462254 IFNLR1Q8IU57 520 aaPredicted RBP9.91□□□□□ -0.82
CSMD3-205ENST00000462254 PRKAR2AP13861 404 aaKnown RBP9.89□□□□□ -0.83
CSMD3-205ENST00000462254 MNX1P50219 401 aaPredicted RBP9.85□□□□□ -0.83
CSMD3-205ENST00000462254 PLEKHG5O94827 1062 aa9.83□□□□□ -0.84
CSMD3-205ENST00000462254 KLHL34Q8N239 644 aa9.82□□□□□ -0.84
CSMD3-205ENST00000462254 FARP1Q9Y4F1 1045 aaPredicted RBP9.8□□□□□ -0.84
CSMD3-205ENST00000462254 AMER1Q5JTC6 1135 aaPredicted RBP9.75□□□□□ -0.85
CSMD3-205ENST00000462254 ZBTB47Q9UFB7 747 aaPredicted RBP9.75□□□□□ -0.85
CSMD3-205ENST00000462254 SPOCK2Q92563 424 aa9.74□□□□□ -0.85
CSMD3-205ENST00000462254 NUBP1P53384 320 aa9.72□□□□□ -0.85
CSMD3-205ENST00000462254 RTN4Q9NQC3 1192 aaKnown RBP9.72□□□□□ -0.85
CSMD3-205ENST00000462254 NPM1P06748 294 aaKnown RBP eCLIP9.71□□□□□ -0.86
CSMD3-205ENST00000462254 POTEHQ6S545 545 aa9.7□□□□□ -0.86
CSMD3-205ENST00000462254 RASEFQ8IZ41 740 aa9.69□□□□□ -0.86
CSMD3-205ENST00000462254 TSPYL2Q9H2G4 693 aaPredicted RBP9.62□□□□□ -0.87
CSMD3-205ENST00000462254 C19orf67A6NJJ6 358 aa9.61□□□□□ -0.87
CSMD3-205ENST00000462254 DCAF8Q5TAQ9 597 aa9.61□□□□□ -0.87
CSMD3-205ENST00000462254 HAX1O00165 279 aa9.6□□□□□ -0.87
CSMD3-205ENST00000462254 CD44P16070 742 aaKnown RBP9.6□□□□□ -0.87
CSMD3-205ENST00000462254 CIZ1Q9ULV3 898 aaPredicted RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms