RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 ACTN4O43707 911 aaKnown RBP10.56□□□□□ -0.72
USP49-205ENST00000448078 PARP9Q8IXQ6 854 aa10.56□□□□□ -0.72
USP49-205ENST00000448078 IL21Q9HBE4 155 aa10.56□□□□□ -0.72
USP49-205ENST00000448078 GCGRP47871 477 aa10.55□□□□□ -0.72
USP49-205ENST00000448078 PUS10Q3MIT2 529 aaKnown RBP10.55□□□□□ -0.72
USP49-205ENST00000448078 SYNJ1O43426 1573 aa10.55□□□□□ -0.72
USP49-205ENST00000448078 CHD1O14646 1710 aa10.55□□□□□ -0.72
USP49-205ENST00000448078 NR1I2O75469 434 aa10.54□□□□□ -0.72
USP49-205ENST00000448078 PRKCSHP14314 528 aaPredicted RBP10.54□□□□□ -0.72
USP49-205ENST00000448078 CD46P15529 392 aa10.54□□□□□ -0.72
USP49-205ENST00000448078 FUT2Q10981 343 aa10.54□□□□□ -0.72
USP49-205ENST00000448078 BLOC1S3Q6QNY0 202 aa10.54□□□□□ -0.72
USP49-205ENST00000448078 KDM4AO75164 1064 aa10.53□□□□□ -0.72
USP49-205ENST00000448078 NEUROD2Q15784 382 aa10.53□□□□□ -0.72
USP49-205ENST00000448078 BEGAINQ9BUH8 593 aa10.53□□□□□ -0.72
USP49-205ENST00000448078 REPIN1Q9BWE0 567 aaKnown RBP10.53□□□□□ -0.72
USP49-205ENST00000448078 ATP6V1AP38606 617 aa10.52□□□□□ -0.73
USP49-205ENST00000448078 GAPVD1Q14C86 1478 aa10.52□□□□□ -0.73
USP49-205ENST00000448078 POLA1P09884 1462 aaPredicted RBP10.51□□□□□ -0.73
USP49-205ENST00000448078 MAGI1Q96QZ7 1491 aaPredicted RBP10.51□□□□□ -0.73
USP49-205ENST00000448078 PRDM2Q13029 1718 aa10.51□□□□□ -0.73
USP49-205ENST00000448078 GRIN2BQ13224 1484 aa10.5□□□□□ -0.73
USP49-205ENST00000448078 SNAPC4Q5SXM2 1469 aa10.5□□□□□ -0.73
USP49-205ENST00000448078 RAD54L2Q9Y4B4 1467 aa10.5□□□□□ -0.73
USP49-205ENST00000448078 TARBP1Q13395 1621 aaKnown RBP10.5□□□□□ -0.73
USP49-205ENST00000448078 GPBP1L1Q9HC44 474 aaPredicted RBP10.49□□□□□ -0.73
USP49-205ENST00000448078 SYNJ2O15056 1496 aa10.49□□□□□ -0.73
USP49-205ENST00000448078 USP46P62068 366 aa10.48□□□□□ -0.73
USP49-205ENST00000448078 TJAP1Q5JTD0 557 aa10.48□□□□□ -0.73
USP49-205ENST00000448078 ZNF516Q92618 1163 aa10.48□□□□□ -0.73
USP49-205ENST00000448078 TMUB1Q9BVT8 246 aa10.48□□□□□ -0.73
USP49-205ENST00000448078 ZPR1O75312 459 aa10.47□□□□□ -0.73
USP49-205ENST00000448078 ITGBL1O95965 494 aaPredicted RBP10.47□□□□□ -0.73
USP49-205ENST00000448078 MS4A1P11836 297 aa10.47□□□□□ -0.73
USP49-205ENST00000448078 DIXDC1Q155Q3 683 aa10.46□□□□□ -0.73
USP49-205ENST00000448078 KDM4CQ9H3R0 1056 aa10.46□□□□□ -0.73
USP49-205ENST00000448078 CLASP1Q7Z460 1538 aa10.46□□□□□ -0.74
USP49-205ENST00000448078 WDR97A6NE52 1622 aa10.46□□□□□ -0.74
USP49-205ENST00000448078 GGCXP38435 758 aa10.45□□□□□ -0.74
USP49-205ENST00000448078 FAM69CQ0P6D2 419 aa10.45□□□□□ -0.74
USP49-205ENST00000448078 SCUBE3Q8IX30 993 aa10.45□□□□□ -0.74
USP49-205ENST00000448078 TLL1O43897 1013 aa10.44□□□□□ -0.74
USP49-205ENST00000448078 Q3C1V9 767 aa10.44□□□□□ -0.74
USP49-205ENST00000448078 MORN1Q5T089 497 aa10.44□□□□□ -0.74
USP49-205ENST00000448078 HOXA2O43364 376 aa10.43□□□□□ -0.74
USP49-205ENST00000448078 FMNL1O95466 1100 aaPredicted RBP10.43□□□□□ -0.74
USP49-205ENST00000448078 SLC27A5Q9Y2P5 690 aa10.43□□□□□ -0.74
USP49-205ENST00000448078 NKX2-3Q8TAU0 364 aa10.42□□□□□ -0.74
USP49-205ENST00000448078 SPIRE2Q8WWL2 714 aa10.42□□□□□ -0.74
USP49-205ENST00000448078 SPSB2Q99619 263 aa10.42□□□□□ -0.74
USP49-205ENST00000448078 TBC1D2Q9BYX2 928 aa10.42□□□□□ -0.74
USP49-205ENST00000448078 GUCA2AQ02747 115 aa10.41□□□□□ -0.74
USP49-205ENST00000448078 HLA-CQ95604 372 aa10.41□□□□□ -0.74
USP49-205ENST00000448078 FGD5Q6ZNL6 1462 aa10.41□□□□□ -0.74
USP49-205ENST00000448078 C6orf229H3BNL8 230 aa10.4□□□□□ -0.74
USP49-205ENST00000448078 FDX1P10109 184 aa10.4□□□□□ -0.74
USP49-205ENST00000448078 CSPP1Q1MSJ5 1256 aa10.4□□□□□ -0.74
USP49-205ENST00000448078 DDRGK1Q96HY6 314 aa10.4□□□□□ -0.74
USP49-205ENST00000448078 ADH1BP00325 375 aa10.39□□□□□ -0.75
USP49-205ENST00000448078 NDUFV2P19404 249 aa10.39□□□□□ -0.75
USP49-205ENST00000448078 RSPH6AQ9H0K4 717 aa10.39□□□□□ -0.75
USP49-205ENST00000448078 MOXD2PA6NHM9 499 aa10.38□□□□□ -0.75
USP49-205ENST00000448078 SLC6A16Q9GZN6 736 aa10.38□□□□□ -0.75
USP49-205ENST00000448078 A0A0G2JS52 829 aa10.37□□□□□ -0.75
USP49-205ENST00000448078 IFFO2Q5TF58 517 aa10.37□□□□□ -0.75
USP49-205ENST00000448078 S1PR4O95977 384 aa10.36□□□□□ -0.75
USP49-205ENST00000448078 PPP1R18Q6NYC8 613 aa10.36□□□□□ -0.75
USP49-205ENST00000448078 FAM117AQ9C073 453 aa10.36□□□□□ -0.75
USP49-205ENST00000448078 NUTM2BA6NNL0 878 aaPredicted RBP10.35□□□□□ -0.75
USP49-205ENST00000448078 NUTM2EB1AL46 878 aaPredicted RBP10.35□□□□□ -0.75
USP49-205ENST00000448078 BRPF1P55201 1214 aaPredicted RBP10.35□□□□□ -0.75
USP49-205ENST00000448078 NUTM2DQ5VT03 806 aaPredicted RBP10.35□□□□□ -0.75
USP49-205ENST00000448078 RNF19BQ6ZMZ0 732 aa10.35□□□□□ -0.75
USP49-205ENST00000448078 RIC3Q7Z5B4 369 aa10.35□□□□□ -0.75
USP49-205ENST00000448078 NUTM2AQ8IVF1 878 aaPredicted RBP10.35□□□□□ -0.75
USP49-205ENST00000448078 IL27Q8NEV9 243 aa10.35□□□□□ -0.75
USP49-205ENST00000448078 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.35□□□□□ -0.75
USP49-205ENST00000448078 POLR3EQ9NVU0 708 aa10.35□□□□□ -0.75
USP49-205ENST00000448078 TSC1Q92574 1164 aa10.34□□□□□ -0.75
USP49-205ENST00000448078 SYMPKQ92797 1274 aaKnown RBP10.33□□□□□ -0.76
USP49-205ENST00000448078 USB1Q9BQ65 265 aaKnown RBP10.33□□□□□ -0.76
USP49-205ENST00000448078 BRICD5Q6PL45 260 aa10.32□□□□□ -0.76
USP49-205ENST00000448078 GRIN2AQ12879 1464 aa10.31□□□□□ -0.76
USP49-205ENST00000448078 CLK2P49760 499 aaKnown RBP10.31□□□□□ -0.76
USP49-205ENST00000448078 MTMR2Q13614 643 aa10.31□□□□□ -0.76
USP49-205ENST00000448078 MYSM1Q5VVJ2 828 aa10.31□□□□□ -0.76
USP49-205ENST00000448078 RSBN1LQ6PCB5 846 aaPredicted RBP10.31□□□□□ -0.76
USP49-205ENST00000448078 PRG4Q92954 1404 aaPredicted RBP10.31□□□□□ -0.76
USP49-205ENST00000448078 PPEF1O14829 653 aaPredicted RBP10.3□□□□□ -0.76
USP49-205ENST00000448078 SALL2Q9Y467 1007 aaPredicted RBP10.3□□□□□ -0.76
USP49-205ENST00000448078 WRNQ14191 1432 aaPredicted RBP eCLIP10.3□□□□□ -0.76
USP49-205ENST00000448078 CCDC24Q8N4L8 307 aa10.29□□□□□ -0.76
USP49-205ENST00000448078 ZBTB3Q9H5J0 574 aa10.29□□□□□ -0.76
USP49-205ENST00000448078 PRDM9Q9NQV7 894 aa10.29□□□□□ -0.76
USP49-205ENST00000448078 FHAD1B1AJZ9 1412 aa10.29□□□□□ -0.76
USP49-205ENST00000448078 ABCC10Q5T3U5 1492 aa10.29□□□□□ -0.76
USP49-205ENST00000448078 CUX1P39880 1505 aa10.28□□□□□ -0.76
USP49-205ENST00000448078 ABCA10Q8WWZ4 1543 aa10.28□□□□□ -0.76
USP49-205ENST00000448078 RETREG3Q86VR2 466 aa10.28□□□□□ -0.76
USP49-205ENST00000448078 THAP11Q96EK4 314 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms