RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 AEBP2Q6ZN18 517 aaPredicted RBP25.55■■□□□ 1.68
USP49-205ENST00000448078 CHIC1Q5VXU3 224 aa24.95■■□□□ 1.58
USP49-205ENST00000448078 PHF23Q9BUL5 403 aaPredicted RBP21.85■■□□□ 1.09
USP49-205ENST00000448078 SENP3Q9H4L4 574 aaPredicted RBP21.85■■□□□ 1.09
USP49-205ENST00000448078 PLPPR3Q6T4P5 718 aa20.32■□□□□ 0.84
USP49-205ENST00000448078 FOXD1Q16676 465 aa20.21■□□□□ 0.83
USP49-205ENST00000448078 ADRA2BP18089 450 aa19.42■□□□□ 0.7
USP49-205ENST00000448078 PPP6R1Q9UPN7 881 aa19.34■□□□□ 0.69
USP49-205ENST00000448078 PIAS4Q8N2W9 510 aaPredicted RBP19.19■□□□□ 0.66
USP49-205ENST00000448078 MSH5O43196 834 aa18.77■□□□□ 0.6
USP49-205ENST00000448078 SCAF1Q9H7N4 1312 aaKnown RBP17.89■□□□□ 0.45
USP49-205ENST00000448078 PPP4R3CPQ6ZMV5 832 aa17.88■□□□□ 0.45
USP49-205ENST00000448078 MAPK8IP2Q13387 824 aaPredicted RBP17.62■□□□□ 0.41
USP49-205ENST00000448078 NCBP3Q53F19 620 aaKnown RBP17.5■□□□□ 0.39
USP49-205ENST00000448078 CNKSR2Q8WXI2 1034 aa17.4■□□□□ 0.38
USP49-205ENST00000448078 KCNA4P22459 653 aa17.36■□□□□ 0.37
USP49-205ENST00000448078 DMRT2Q9Y5R5 561 aa17.36■□□□□ 0.37
USP49-205ENST00000448078 POTEDQ86YR6 584 aa17.16■□□□□ 0.34
USP49-205ENST00000448078 NPM3O75607 178 aaKnown RBP17.1■□□□□ 0.33
USP49-205ENST00000448078 RNF216Q9NWF9 866 aaPredicted RBP17.03■□□□□ 0.32
USP49-205ENST00000448078 DCAF8L1A6NGE4 600 aa16.93■□□□□ 0.3
USP49-205ENST00000448078 HOXD11P31277 338 aaPredicted RBP16.92■□□□□ 0.3
USP49-205ENST00000448078 SLC4A1APQ9BWU0 796 aaKnown RBP16.61■□□□□ 0.25
USP49-205ENST00000448078 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.38■□□□□ 0.21
USP49-205ENST00000448078 DNAJC5BQ9UF47 199 aa16.37■□□□□ 0.21
USP49-205ENST00000448078 EHMT2Q96KQ7 1210 aa16.14■□□□□ 0.17
USP49-205ENST00000448078 SLC4A2P04920 1241 aa16.09■□□□□ 0.17
USP49-205ENST00000448078 FOXD4L1Q9NU39 408 aa16.04■□□□□ 0.16
USP49-205ENST00000448078 RNF39Q9H2S5 420 aa15.97■□□□□ 0.15
USP49-205ENST00000448078 U3KPZ7 1027 aaPredicted RBP15.91■□□□□ 0.14
USP49-205ENST00000448078 ZBTB22O15209 634 aa15.87■□□□□ 0.13
USP49-205ENST00000448078 MYCNP04198 464 aaPredicted RBP15.87■□□□□ 0.13
USP49-205ENST00000448078 C1QBPQ07021 282 aaKnown RBP15.84■□□□□ 0.13
USP49-205ENST00000448078 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.83■□□□□ 0.12
USP49-205ENST00000448078 HNRNPUL2Q1KMD3 747 aaKnown RBP15.83■□□□□ 0.12
USP49-205ENST00000448078 CACNB1Q02641 598 aaPredicted RBP15.81■□□□□ 0.12
USP49-205ENST00000448078 CSRNP3Q8WYN3 585 aa15.76■□□□□ 0.11
USP49-205ENST00000448078 APLP2Q06481 763 aa15.75■□□□□ 0.11
USP49-205ENST00000448078 SAMD1Q6SPF0 538 aaPredicted RBP15.74■□□□□ 0.11
USP49-205ENST00000448078 CAPN15O75808 1086 aa15.63■□□□□ 0.09
USP49-205ENST00000448078 TRHP20396 242 aaPredicted RBP15.54■□□□□ 0.08
USP49-205ENST00000448078 SPINK5Q9NQ38 1064 aaPredicted RBP15.53■□□□□ 0.08
USP49-205ENST00000448078 ZNF219Q9P2Y4 722 aaPredicted RBP15.45■□□□□ 0.06
USP49-205ENST00000448078 ATXN8OSP0DMR3 200 aa15.42■□□□□ 0.06
USP49-205ENST00000448078 ATF5Q9Y2D1 282 aaPredicted RBP15.35■□□□□ 0.05
USP49-205ENST00000448078 ABCB7O75027 752 aa15.3■□□□□ 0.04
USP49-205ENST00000448078 DSG3P32926 999 aa15.19■□□□□ 0.02
USP49-205ENST00000448078 POLA2Q14181 598 aa15.19■□□□□ 0.02
USP49-205ENST00000448078 ZBTB12Q9Y330 459 aaPredicted RBP14.97□□□□□ -0.01
USP49-205ENST00000448078 FBLN2P98095 1184 aa14.93□□□□□ -0.02
USP49-205ENST00000448078 OSCARQ8IYS5 282 aa14.67□□□□□ -0.06
USP49-205ENST00000448078 MKRN4PQ13434 485 aaPredicted RBP14.65□□□□□ -0.06
USP49-205ENST00000448078 RBM42Q9BTD8 480 aaKnown RBP14.61□□□□□ -0.07
USP49-205ENST00000448078 ZNF692Q9BU19 519 aaPredicted RBP14.5□□□□□ -0.09
USP49-205ENST00000448078 SPDYE2BA6NHP3 402 aa14.48□□□□□ -0.09
USP49-205ENST00000448078 SPDYE6P0CI01 402 aa14.48□□□□□ -0.09
USP49-205ENST00000448078 SPDYE2Q495Y8 402 aa14.48□□□□□ -0.09
USP49-205ENST00000448078 SPDYE4A6NLX3 237 aa14.45□□□□□ -0.1
USP49-205ENST00000448078 FKBP8Q14318 412 aa14.42□□□□□ -0.1
USP49-205ENST00000448078 AKT1S1Q96B36 256 aa14.34□□□□□ -0.11
USP49-205ENST00000448078 PABPN1Q86U42 306 aaKnown RBP eCLIP14.28□□□□□ -0.12
USP49-205ENST00000448078 SSUH2Q9Y2M2 353 aa14.26□□□□□ -0.13
USP49-205ENST00000448078 NISCHQ9Y2I1 1504 aa14.25□□□□□ -0.13
USP49-205ENST00000448078 REM2Q8IYK8 340 aaPredicted RBP14.2□□□□□ -0.14
USP49-205ENST00000448078 CLEC11AQ9Y240 323 aa14.18□□□□□ -0.14
USP49-205ENST00000448078 SPDYE1Q8NFV5 336 aaPredicted RBP14.14□□□□□ -0.15
USP49-205ENST00000448078 PITPNM1O00562 1244 aa14.04□□□□□ -0.16
USP49-205ENST00000448078 STAG3Q9UJ98 1225 aa14.04□□□□□ -0.16
USP49-205ENST00000448078 CHRDL2Q6WN34 429 aa13.99□□□□□ -0.17
USP49-205ENST00000448078 PRR29P0C7W0 189 aa13.98□□□□□ -0.17
USP49-205ENST00000448078 FBXO3Q9UK99 471 aa13.96□□□□□ -0.17
USP49-205ENST00000448078 PROM2Q8N271 834 aa13.95□□□□□ -0.18
USP49-205ENST00000448078 PLEKHG5O94827 1062 aa13.85□□□□□ -0.19
USP49-205ENST00000448078 PLCD3Q8N3E9 789 aa13.81□□□□□ -0.2
USP49-205ENST00000448078 MIER1Q8N108 512 aa13.8□□□□□ -0.2
USP49-205ENST00000448078 PRKAR2AP13861 404 aaKnown RBP13.76□□□□□ -0.21
USP49-205ENST00000448078 PIP4P2Q8N4L2 257 aa13.76□□□□□ -0.21
USP49-205ENST00000448078 CHADLQ6NUI6 762 aa13.73□□□□□ -0.21
USP49-205ENST00000448078 FXR2P51116 673 aaKnown RBP eCLIP13.72□□□□□ -0.21
USP49-205ENST00000448078 VASPP50552 380 aaPredicted RBP13.68□□□□□ -0.22
USP49-205ENST00000448078 KLHL34Q8N239 644 aa13.66□□□□□ -0.22
USP49-205ENST00000448078 POTEHQ6S545 545 aa13.63□□□□□ -0.23
USP49-205ENST00000448078 CREBZFQ9NS37 354 aa13.63□□□□□ -0.23
USP49-205ENST00000448078 ZBTB47Q9UFB7 747 aaPredicted RBP13.61□□□□□ -0.23
USP49-205ENST00000448078 NPM1P06748 294 aaKnown RBP eCLIP13.57□□□□□ -0.24
USP49-205ENST00000448078 FARP1Q9Y4F1 1045 aaPredicted RBP13.56□□□□□ -0.24
USP49-205ENST00000448078 HAX1O00165 279 aa13.49□□□□□ -0.25
USP49-205ENST00000448078 PAK3O75914 559 aaPredicted RBP13.44□□□□□ -0.26
USP49-205ENST00000448078 IFNLR1Q8IU57 520 aaPredicted RBP13.42□□□□□ -0.26
USP49-205ENST00000448078 SPOCK2Q92563 424 aa13.39□□□□□ -0.27
USP49-205ENST00000448078 MNX1P50219 401 aaPredicted RBP13.38□□□□□ -0.27
USP49-205ENST00000448078 CD44P16070 742 aaKnown RBP13.37□□□□□ -0.27
USP49-205ENST00000448078 TSPYL2Q9H2G4 693 aaPredicted RBP13.36□□□□□ -0.27
USP49-205ENST00000448078 ABCC9O60706 1549 aa13.34□□□□□ -0.27
USP49-205ENST00000448078 DCAF8Q5TAQ9 597 aa13.33□□□□□ -0.28
USP49-205ENST00000448078 FAM212AQ96EL1 285 aa13.33□□□□□ -0.28
USP49-205ENST00000448078 ZRANB1Q9UGI0 708 aa13.31□□□□□ -0.28
USP49-205ENST00000448078 CIZ1Q9ULV3 898 aaPredicted RBP13.31□□□□□ -0.28
USP49-205ENST00000448078 RASEFQ8IZ41 740 aa13.27□□□□□ -0.29
USP49-205ENST00000448078 C19orf67A6NJJ6 358 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms