RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 TPM1P09493 284 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 TRDNQ13061 729 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 CPLX2Q6PUV4 134 aaKnown RBP10.62□□□□□ -0.71
PTCD3-201ENST00000254630 CCDC47Q96A33 483 aaKnown RBP10.62□□□□□ -0.71
PTCD3-201ENST00000254630 C9orf84Q5VXU9 1444 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 HSP90AB4PQ58FF6 505 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 KIF7Q2M1P5 1343 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 SCAPERQ9BY12 1400 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 ERC2O15083 957 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 AIMP1Q12904 312 aaKnown RBP10.62□□□□□ -0.71
PTCD3-201ENST00000254630 INTS3Q68E01 1043 aaKnown RBP10.62□□□□□ -0.71
PTCD3-201ENST00000254630 GGNBP2Q9H3C7 697 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 NLRP2Q9NX02 1062 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 ANO8Q9HCE9 1232 aaPredicted RBP10.62□□□□□ -0.71
PTCD3-201ENST00000254630 KIF6Q6ZMV9 814 aa10.62□□□□□ -0.71
PTCD3-201ENST00000254630 ARAP1Q96P48 1450 aa10.61□□□□□ -0.71
PTCD3-201ENST00000254630 HMGXB3Q12766 1538 aa10.61□□□□□ -0.71
PTCD3-201ENST00000254630 TMEM132EQ6IEE7 984 aa10.61□□□□□ -0.71
PTCD3-201ENST00000254630 CFTRP13569 1480 aa10.61□□□□□ -0.71
PTCD3-201ENST00000254630 PCMTD1Q96MG8 357 aaPredicted RBP10.61□□□□□ -0.71
PTCD3-201ENST00000254630 CPLX1O14810 134 aa10.61□□□□□ -0.71
PTCD3-201ENST00000254630 TOPBP1Q92547 1522 aa10.6□□□□□ -0.71
PTCD3-201ENST00000254630 ESCO1Q5FWF5 840 aa10.6□□□□□ -0.71
PTCD3-201ENST00000254630 HOOK1Q9UJC3 728 aaKnown RBP10.6□□□□□ -0.71
PTCD3-201ENST00000254630 FYB1O15117 783 aa10.6□□□□□ -0.71
PTCD3-201ENST00000254630 DDX49Q9Y6V7 483 aaKnown RBP10.6□□□□□ -0.71
PTCD3-201ENST00000254630 FOSBP53539 338 aa10.6□□□□□ -0.71
PTCD3-201ENST00000254630 BECN2A8MW95 431 aa10.59□□□□□ -0.71
PTCD3-201ENST00000254630 CCDC27Q2M243 656 aa10.59□□□□□ -0.71
PTCD3-201ENST00000254630 ABTB2Q8N961 1025 aa10.59□□□□□ -0.71
PTCD3-201ENST00000254630 PHF23Q9BUL5 403 aaPredicted RBP10.59□□□□□ -0.71
PTCD3-201ENST00000254630 TIAM1Q13009 1591 aa10.59□□□□□ -0.71
PTCD3-201ENST00000254630 CUL7Q14999 1698 aa10.59□□□□□ -0.71
PTCD3-201ENST00000254630 SLC4A3P48751 1232 aa10.59□□□□□ -0.71
PTCD3-201ENST00000254630 UBTFL1P0CB47 393 aaPredicted RBP10.58□□□□□ -0.71
PTCD3-201ENST00000254630 NEUROD6Q96NK8 337 aa10.58□□□□□ -0.72
PTCD3-201ENST00000254630 KIF14Q15058 1648 aa10.58□□□□□ -0.72
PTCD3-201ENST00000254630 NLRP6P59044 892 aa10.58□□□□□ -0.72
PTCD3-201ENST00000254630 BRD4O60885 1362 aaPredicted RBP10.58□□□□□ -0.72
PTCD3-201ENST00000254630 CCDC30Q5VVM6 783 aa10.58□□□□□ -0.72
PTCD3-201ENST00000254630 GAS2L2Q8NHY3 880 aa10.58□□□□□ -0.72
PTCD3-201ENST00000254630 WASHC2AQ641Q2 1341 aa10.57□□□□□ -0.72
PTCD3-201ENST00000254630 PLEKHO1Q53GL0 409 aaPredicted RBP10.57□□□□□ -0.72
PTCD3-201ENST00000254630 WASHC4Q2M389 1173 aa10.57□□□□□ -0.72
PTCD3-201ENST00000254630 TXNDC2Q86VQ3 553 aa10.57□□□□□ -0.72
PTCD3-201ENST00000254630 ERBINQ96RT1 1412 aa10.57□□□□□ -0.72
PTCD3-201ENST00000254630 CCDC70Q6NSX1 233 aa10.57□□□□□ -0.72
PTCD3-201ENST00000254630 CNTROBQ8N137 903 aa10.57□□□□□ -0.72
PTCD3-201ENST00000254630 ANKRD20A12PQ8NF67 263 aa10.57□□□□□ -0.72
PTCD3-201ENST00000254630 CCDC43Q96MW1 224 aaKnown RBP10.56□□□□□ -0.72
PTCD3-201ENST00000254630 PRAM1Q96QH2 718 aa10.56□□□□□ -0.72
PTCD3-201ENST00000254630 SMC3Q9UQE7 1217 aa10.56□□□□□ -0.72
PTCD3-201ENST00000254630 BICD2Q8TD16 824 aa10.56□□□□□ -0.72
PTCD3-201ENST00000254630 KIAA1107Q9UPP5 1409 aa10.56□□□□□ -0.72
PTCD3-201ENST00000254630 PROSER2Q86WR7 435 aaPredicted RBP10.55□□□□□ -0.72
PTCD3-201ENST00000254630 DAPK1P53355 1430 aa10.55□□□□□ -0.72
PTCD3-201ENST00000254630 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.55□□□□□ -0.72
PTCD3-201ENST00000254630 BRMS1Q9HCU9 246 aa10.55□□□□□ -0.72
PTCD3-201ENST00000254630 HFM1A2PYH4 1435 aa10.55□□□□□ -0.72
PTCD3-201ENST00000254630 SAMD1Q6SPF0 538 aaPredicted RBP10.55□□□□□ -0.72
PTCD3-201ENST00000254630 RBM42Q9BTD8 480 aaKnown RBP10.55□□□□□ -0.72
PTCD3-201ENST00000254630 CDK19Q9BWU1 502 aa10.55□□□□□ -0.72
PTCD3-201ENST00000254630 CDC45O75419 566 aa10.55□□□□□ -0.72
PTCD3-201ENST00000254630 PANK1Q8TE04 598 aa10.55□□□□□ -0.72
PTCD3-201ENST00000254630 IQGAP2Q13576 1575 aa10.54□□□□□ -0.72
PTCD3-201ENST00000254630 SAFBQ15424 915 aaKnown RBP eCLIP10.54□□□□□ -0.72
PTCD3-201ENST00000254630 AFAP1Q8N556 730 aa10.54□□□□□ -0.72
PTCD3-201ENST00000254630 RALYLQ86SE5 291 aaKnown RBP10.54□□□□□ -0.72
PTCD3-201ENST00000254630 CCAR2Q8N163 923 aaKnown RBP10.54□□□□□ -0.72
PTCD3-201ENST00000254630 STRN4Q9NRL3 753 aa10.54□□□□□ -0.72
PTCD3-201ENST00000254630 PCF11O94913 1555 aaKnown RBP10.54□□□□□ -0.72
PTCD3-201ENST00000254630 AAMPQ13685 434 aa10.54□□□□□ -0.72
PTCD3-201ENST00000254630 TTC39AQ5SRH9 613 aa10.54□□□□□ -0.72
PTCD3-201ENST00000254630 POGZQ7Z3K3 1410 aa10.54□□□□□ -0.72
PTCD3-201ENST00000254630 VPS37CA5D8V6 355 aaPredicted RBP10.54□□□□□ -0.72
PTCD3-201ENST00000254630 TATP17735 454 aaPredicted RBP10.54□□□□□ -0.72
PTCD3-201ENST00000254630 POLA1P09884 1462 aaPredicted RBP10.53□□□□□ -0.72
PTCD3-201ENST00000254630 MTHFSP49914 203 aa10.53□□□□□ -0.72
PTCD3-201ENST00000254630 LNPKQ9C0E8 428 aa10.53□□□□□ -0.72
PTCD3-201ENST00000254630 PPP2R1AP30153 589 aa10.53□□□□□ -0.72
PTCD3-201ENST00000254630 CFAP70Q5T0N1 1121 aa10.53□□□□□ -0.72
PTCD3-201ENST00000254630 PSMA5P28066 241 aa10.53□□□□□ -0.72
PTCD3-201ENST00000254630 DNAJC2Q99543 621 aaKnown RBP10.53□□□□□ -0.72
PTCD3-201ENST00000254630 FSD1Q9BTV5 496 aa10.53□□□□□ -0.72
PTCD3-201ENST00000254630 RTEL1-TNFRSF6BF6WH68 1400 aa10.53□□□□□ -0.72
PTCD3-201ENST00000254630 TROQ12816 1431 aaPredicted RBP10.53□□□□□ -0.72
PTCD3-201ENST00000254630 CDK13Q14004 1512 aaKnown RBP10.53□□□□□ -0.72
PTCD3-201ENST00000254630 FAM135AQ9P2D6 1515 aa10.53□□□□□ -0.72
PTCD3-201ENST00000254630 FAM177BA6PVY3 158 aa10.52□□□□□ -0.72
PTCD3-201ENST00000254630 SASS6Q6UVJ0 657 aa10.52□□□□□ -0.72
PTCD3-201ENST00000254630 TBC1D2BQ9UPU7 963 aa10.52□□□□□ -0.72
PTCD3-201ENST00000254630 PTPN23Q9H3S7 1636 aa10.52□□□□□ -0.73
PTCD3-201ENST00000254630 WWC1Q8IX03 1113 aa10.52□□□□□ -0.73
PTCD3-201ENST00000254630 CABP4P57796 275 aa10.52□□□□□ -0.73
PTCD3-201ENST00000254630 THEMISQ8N1K5 641 aaPredicted RBP10.51□□□□□ -0.73
PTCD3-201ENST00000254630 ZNF592Q92610 1267 aa10.51□□□□□ -0.73
PTCD3-201ENST00000254630 PRKAR2BP31323 418 aa10.51□□□□□ -0.73
PTCD3-201ENST00000254630 ADAMTS8Q9UP79 889 aa10.51□□□□□ -0.73
PTCD3-201ENST00000254630 EPRSP07814 1512 aaKnown RBP10.51□□□□□ -0.73
PTCD3-201ENST00000254630 KDM4AO75164 1064 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms