RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Ric3Q8BPM6 367 aa19.2■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Slc52a2Q9D8F3 450 aa19.2■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 MecomP14404 1042 aa19.2■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Tspyl2Q7TQI8 677 aa19.2■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Cald1E9QA15 768 aaKnown RBP19.19■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Rab11fip3Q8CHD8 1047 aa19.19■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 AampJ3QN89 436 aa19.19■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Nol10Q5RJG1 687 aaKnown RBP19.19■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Atxn3Q9CVD2 355 aa19.18■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Gm973E9Q295 1059 aa19.17■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Rabep1O35551 862 aa19.17■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Mug2P28666 1451 aa19.17■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Kdm5bQ80Y84 1544 aa19.17■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Pknox2Q8BG99 474 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Mapkbp1Q6NS57 1503 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 OvosQ3UU35 1456 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Ppp2r3aB2RXC8 1150 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Chmp3Q9CQ10 224 aa19.16■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Taok2Q6ZQ29 1240 aa19.15■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Ssh2Q5SW75 1423 aa19.15■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Adcy10Q8C0T9 1614 aa19.15■□□□□ 0.66
Ccdc88b-201ENSMUST00000113440 Kdm3bQ6ZPY7 1562 aa19.14■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 MpripP97434 1024 aa19.14■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Arhgef12Q8R4H2 1543 aaKnown RBP19.13■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Pcmtd1P59913 357 aa19.13■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Rsph3aQ3UFY4 516 aa19.13■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 SlkO54988 1233 aa19.13■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 VgfQ0VGU4 617 aa19.12■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Kank1E9Q238 1360 aa19.12■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 RalgapbQ8BQZ4 1484 aa19.12■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Q8BT18 775 aa19.12■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Iffo2Q8R2V2 512 aa19.11■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 TatQ8QZR1 454 aa19.11■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Ythdc2B2RR83 1445 aaKnown RBP19.11■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 HnrnpmQ9D0E1 729 aaKnown RBP19.11■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Ccdc171E9Q1U1 1324 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 SkilQ60665 675 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Tnpo1Q8BFY9 898 aaKnown RBP19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Cabp2Q9JLK4 216 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 PalmQ9Z0P4 383 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Gsdma3Q5Y4Y6 464 aa19.1■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Liat1Q810M6 228 aa19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Chmp7Q8R1T1 451 aa19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Cdk13Q69ZA1 1511 aaKnown RBP19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Becn1O88597 448 aa19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Nek4Q9Z1J2 792 aa19.09■□□□□ 0.65
Ccdc88b-201ENSMUST00000113440 Nup160Q9Z0W3 1402 aaKnown RBP19.08■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Sv2bQ8BG39 683 aa19.07■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Calcoco2A2A6M5 331 aa19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Smarce1O54941 411 aaKnown RBP19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Map4k4P97820 1233 aaKnown RBP19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 CgnP59242 1191 aa19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Abca5Q8K448 1642 aa19.06■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Naip6Q9JIB6 1403 aa19.05■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Q9D2X8 372 aa19.05■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Cetn4Q8K4K1 168 aa19.04■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Casq1O09165 405 aa19.04■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Ush1cQ9ES64 910 aa19.04■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 IbtkQ6ZPR6 1352 aaKnown RBP19.04■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Chmp4cQ9D7F7 232 aa19.03■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Zranb1Q7M760 708 aa19.03■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Bcl2l13P59017 434 aa19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Pdcl3Q8BVF2 240 aa19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Smc5Q8CG46 1101 aaKnown RBP19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Atp6v1dP57746 247 aa19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Cog6Q8R3I3 657 aa19.02■□□□□ 0.64
Ccdc88b-201ENSMUST00000113440 Dennd6aQ8BH65 605 aa19.02■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 AppP12023 770 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Maco1Q7TQE6 664 aaKnown RBP19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Plcd4Q8K3R3 807 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Cpsf1Q9EPU4 1441 aaKnown RBP19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 HypkQ9CR41 129 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Zmym4A2A791 1549 aaKnown RBP19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Stk11ipQ3TAA7 1072 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Cdc37l1Q9CZP7 335 aa19.01■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Gm10471E9Q1C7 252 aa19■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 RdxP26043 583 aaKnown RBP19■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Pip4k2bQ80XI4 416 aa19■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Tceal9Q9DD24 104 aa19■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Cfdp1O88271 295 aaKnown RBP18.99■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Atf3Q60765 181 aa18.99■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Kif18aQ91WD7 886 aa18.99■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Fchsd2Q3USJ8 740 aa18.98■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Phactr2B1AVP0 632 aa18.98■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Filip1lQ6P6L0 1131 aa18.98■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Abcc1O35379 1528 aa18.97■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Gm156Q58A37 223 aa18.97■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Evi5lH3BKQ3 813 aa18.97■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Kiaa0754Q69ZZ9 979 aa18.97■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Uspl1Q3ULM6 1089 aa18.96■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 PtprgQ05909 1442 aa18.96■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Hmox1P14901 289 aa18.96■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Anapc15P60007 132 aa18.96■□□□□ 0.63
Ccdc88b-201ENSMUST00000113440 Ggnbp2Q5SV77 696 aa18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Larp1bA0A0A6YXJ7 370 aaKnown RBP18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Slc12a5Q91V14 1138 aa18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Cyp46a1Q9WVK8 500 aa18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Gcc2Q8CHG3 1679 aa18.95■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 St18Q80TY4 1045 aa18.94■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Gprasp1Q5U4C1 1347 aa18.94■□□□□ 0.62
Retrieved 100 of 22,080 RNA–protein pairs in 25.8 ms