RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Cdk19Q8BWD8 501 aa12.62□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Chmp7Q8R1T1 451 aa12.62□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Tpm3-rs7D3Z2H9 248 aa12.62□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Anapc15P60007 132 aa12.62□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 RdxP26043 583 aaKnown RBP12.61□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Pla2r1Q62028 1487 aa12.61□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Sv2bQ8BG39 683 aa12.61□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 KarsQ99MN1 595 aaKnown RBP12.61□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Arhgef12Q8R4H2 1543 aaKnown RBP12.61□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Atp10dQ8K2X1 1416 aa12.6□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Disp1Q3TDN0 1521 aa12.6□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Ccdc47Q9D024 483 aaKnown RBP12.6□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 MsnP26041 577 aaKnown RBP12.6□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Pak3Q61036 559 aa12.6□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 HypkQ9CR41 129 aa12.59□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Apaf1O88879 1249 aa12.59□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Erc2Q6PH08 957 aa12.59□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Dusp27Q148W8 1138 aa12.59□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Ddx11Q6AXC6 880 aa12.59□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 OvosQ3UU35 1456 aa12.59□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 RalgapbQ8BQZ4 1484 aa12.59□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 SlkO54988 1233 aa12.59□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Becn1O88597 448 aa12.59□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 1700010I14RikQ7TPG0 532 aa12.58□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Rnf20Q5DTM8 973 aa12.58□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Gcc1Q9D4H2 778 aa12.58□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Cyp46a1Q9WVK8 500 aa12.58□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Samd9lQ69Z37 1561 aa12.58□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 WizO88286 1684 aaKnown RBP12.58□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Clstn1Q9EPL2 979 aa12.58□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 PhaxQ9JJT9 385 aaKnown RBP12.58□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Nap1l3Q794H2 544 aa12.58□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Rfx1P48377 963 aa12.57□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Calcoco2A2A6M5 331 aa12.57□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Nectin2P32507 530 aa12.57□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 TatQ8QZR1 454 aa12.57□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Q9D2X8 372 aa12.57□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Sf3a1Q8K4Z5 791 aaKnown RBP12.56□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Afap1Q80YS6 731 aa12.56□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Cc2d1aQ8K1A6 943 aa12.56□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Zkscan2G3X952 960 aa12.56□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Nek4Q9Z1J2 792 aa12.56□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 L3mbtl2P59178 703 aa12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Sos1Q62245 1319 aa12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Lmtk2Q3TYD6 1471 aa12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Gtf3c3Q3TMP1 882 aa12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Srek1Q8BZX4 494 aaKnown RBP12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Cchcr1Q8K2I2 770 aa12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Shroom2A2ALU4 1481 aa12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Atp7aQ64430 1491 aa12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 VgfQ0VGU4 617 aa12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Ccer1Q9CQL2 403 aa12.55□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Ggt6Q6PDE7 497 aa12.54□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Ush1cQ9ES64 910 aa12.54□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Hs1bp3Q3TC93 395 aa12.54□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 PxdnQ3UQ28 1475 aa12.53□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 AppP12023 770 aa12.53□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Gimap6Q8K349 305 aa12.53□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Kank1E9Q238 1360 aa12.53□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Kif4P33174 1231 aa12.53□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Nutm1Q8BHP2 1126 aa12.53□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Mapkbp1Q6NS57 1503 aa12.52□□□□□ -0.4
Ccdc40-201ENSMUST00000035935 Hmox1P14901 289 aa12.52□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Ppp1r15aP17564 657 aa12.52□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Cdc37l1Q9CZP7 335 aa12.52□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Gnai2P08752 355 aaKnown RBP12.52□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 CrebrfQ8CDG5 640 aaKnown RBP12.52□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Gripap1Q8VD04 806 aa12.52□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Cfap74Q3UY96 1578 aa12.51□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Cfdp1O88271 295 aaKnown RBP12.51□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Cplx2P84086 134 aa12.51□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 AnlnQ8K298 1121 aaKnown RBP12.51□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 PalmQ9Z0P4 383 aa12.51□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 PsapQ61207 557 aaKnown RBP12.51□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Dennd6aQ8BH65 605 aa12.51□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Smc3Q9CW03 1217 aaKnown RBP12.51□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Gapvd1Q6PAR5 1458 aa12.51□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Ints3Q7TPD0 1041 aaKnown RBP12.5□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Evc2Q8K1G2 1220 aa12.5□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Cpsf1Q9EPU4 1441 aaKnown RBP12.5□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 MpripP97434 1024 aa12.5□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 MvpQ9EQK5 861 aa12.5□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Adgrl2Q8JZZ7 1487 aa12.5□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Fmnl2A2APV2 1086 aa12.5□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 NexnQ7TPW1 607 aa12.5□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Cabp2Q9JLK4 216 aa12.5□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Wwc1Q5SXA9 1104 aa12.49□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Isy1Q69ZQ2 285 aaKnown RBP12.49□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Tnpo1Q8BFY9 898 aaKnown RBP12.49□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Phactr2B1AVP0 632 aa12.49□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Nphp1Q9QY53 687 aa12.49□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Sall3Q62255 1320 aa12.49□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Zmym4A2A791 1549 aaKnown RBP12.49□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Psma5Q9Z2U1 241 aaKnown RBP12.49□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Q8C5K5 320 aa12.49□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Tpd52l1O54818 204 aa12.48□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Sh3bgrQ9WUZ7 214 aa12.48□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Atf7ipQ7TT18 1306 aa12.48□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Atf3Q60765 181 aa12.48□□□□□ -0.41
Ccdc40-201ENSMUST00000035935 Kif18aQ91WD7 886 aa12.48□□□□□ -0.41
Retrieved 100 of 22,080 RNA–protein pairs in 42.7 ms