RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C SPI1P40092 148 aa3.01□□□□□ -1.93
DEF1YKL054C YNL190WP53872 204 aa3.01□□□□□ -1.93
DEF1YKL054C YDR246W-AQ3E763 66 aa3.01□□□□□ -1.93
DEF1YKL054C ATP18P81450 59 aa3.01□□□□□ -1.93
DEF1YKL054C PDR12Q02785 1511 aa3□□□□□ -1.93
DEF1YKL054C HAP1P0CE41 1502 aa2.99□□□□□ -1.93
DEF1YKL054C FKS3Q04952 1785 aa2.99□□□□□ -1.93
DEF1YKL054C TY2B-LR1P0C2J3 1770 aa2.97□□□□□ -1.93
DEF1YKL054C TY2B-FP0CX63 1770 aa2.97□□□□□ -1.93
DEF1YKL054C TY2B-GR2P0CX64 1770 aa2.97□□□□□ -1.93
DEF1YKL054C TY2B-DR2Q03494 1770 aa2.97□□□□□ -1.93
DEF1YKL054C TY2B-OR1Q12113 1770 aa2.97□□□□□ -1.93
DEF1YKL054C TY2B-BQ12491 1770 aa2.97□□□□□ -1.93
DEF1YKL054C TY2B-OR2Q12501 1770 aa2.97□□□□□ -1.93
DEF1YKL054C MON2P48563 1636 aaPredicted RBP2.96□□□□□ -1.94
DEF1YKL054C YMR141CP40211 102 aa2.96□□□□□ -1.94
DEF1YKL054C TY2B-DR3Q07791 1770 aaKnown RBP2.94□□□□□ -1.94
DEF1YKL054C AUA1P32450 94 aa2.94□□□□□ -1.94
DEF1YKL054C HUA1P40325 198 aa2.94□□□□□ -1.94
DEF1YKL054C RPC10P40422 70 aa2.93□□□□□ -1.94
DEF1YKL054C YHR213W-BQ8TGK1 99 aa2.93□□□□□ -1.94
DEF1YKL054C DNF3Q12674 1656 aa2.93□□□□□ -1.94
DEF1YKL054C DNF2Q12675 1612 aa2.92□□□□□ -1.94
DEF1YKL054C COX7P10174 60 aa2.92□□□□□ -1.94
DEF1YKL054C ATP17Q06405 101 aa2.91□□□□□ -1.94
DEF1YKL054C SDH6Q3E785 79 aa2.91□□□□□ -1.94
DEF1YKL054C IML1P47170 1584 aa2.9□□□□□ -1.95
DEF1YKL054C APC1P53886 1748 aa2.87□□□□□ -1.95
DEF1YKL054C RPS30AP0CX33 63 aaKnown RBP2.87□□□□□ -1.95
DEF1YKL054C RPS30BP0CX34 63 aaKnown RBP2.87□□□□□ -1.95
DEF1YKL054C EDC1P53080 175 aaPredicted RBP2.87□□□□□ -1.95
DEF1YKL054C SNQ2P32568 1501 aaKnown RBP2.86□□□□□ -1.95
DEF1YKL054C PDR5P33302 1511 aaKnown RBP2.86□□□□□ -1.95
DEF1YKL054C SPT6P23615 1451 aaKnown RBP2.85□□□□□ -1.95
DEF1YKL054C YPR108W-AQ3E7B3 70 aa2.85□□□□□ -1.95
DEF1YKL054C YJR107C-AP0CT86 78 aa2.84□□□□□ -1.95
DEF1YKL054C YBR072C-AQ3E794 53 aa2.84□□□□□ -1.95
DEF1YKL054C YOL097W-AQ3E7Y9 61 aa2.84□□□□□ -1.96
DEF1YKL054C YCF1P39109 1515 aaKnown RBP2.83□□□□□ -1.96
DEF1YKL054C TY3B-GQ99315 1547 aa2.83□□□□□ -1.96
DEF1YKL054C CDC25P04821 1589 aa2.83□□□□□ -1.96
DEF1YKL054C RPO21P04050 1733 aaKnown RBP2.82□□□□□ -1.96
DEF1YKL054C RPL38P49167 78 aaKnown RBP2.81□□□□□ -1.96
DEF1YKL054C VTH1P40438 1549 aa2.81□□□□□ -1.96
DEF1YKL054C VTH2P40890 1549 aa2.81□□□□□ -1.96
DEF1YKL054C ARO1P08566 1588 aaKnown RBP2.81□□□□□ -1.96
DEF1YKL054C MMS1Q06211 1407 aa2.8□□□□□ -1.96
DEF1YKL054C RIM15P43565 1770 aa2.79□□□□□ -1.96
DEF1YKL054C YLR146W-AQ2V2P1 62 aa2.78□□□□□ -1.96
DEF1YKL054C YDR182W-AQ3E796 67 aa2.78□□□□□ -1.96
DEF1YKL054C HUB1Q6Q546 73 aa2.77□□□□□ -1.97
DEF1YKL054C YOR192C-CQ3E736 78 aa2.76□□□□□ -1.97
DEF1YKL054C RPL43AP0CX25 92 aaKnown RBP2.75□□□□□ -1.97
DEF1YKL054C RPL43BP0CX26 92 aa2.75□□□□□ -1.97
DEF1YKL054C SPO14P36126 1683 aa2.74□□□□□ -1.97
DEF1YKL054C YKL023C-AQ2V2P3 75 aa2.73□□□□□ -1.97
DEF1YKL054C YOL166W-AQ8TGJ1 51 aa2.72□□□□□ -1.97
DEF1YKL054C BCK1Q01389 1478 aa2.71□□□□□ -1.98
DEF1YKL054C YBR032WP38223 100 aa2.68□□□□□ -1.98
DEF1YKL054C YBL039W-BP0C268 59 aa2.68□□□□□ -1.98
DEF1YKL054C YLR307C-AQ3E825 87 aa2.67□□□□□ -1.98
DEF1YKL054C YLR157W-EP0CF00 54 aa2.66□□□□□ -1.98
DEF1YKL054C RPL37AP49166 88 aaKnown RBP2.66□□□□□ -1.98
DEF1YKL054C YOL164W-AQ3E7A5 60 aa2.66□□□□□ -1.98
DEF1YKL054C YBR200W-AQ3E755 54 aa2.64□□□□□ -1.99
DEF1YKL054C SSK2P53599 1579 aa2.63□□□□□ -1.99
DEF1YKL054C YOR093CQ12275 1648 aa2.63□□□□□ -1.99
DEF1YKL054C PEP1P32319 1579 aa2.63□□□□□ -1.99
DEF1YKL054C YBT1P32386 1661 aa2.62□□□□□ -1.99
DEF1YKL054C HKR1P41809 1802 aa2.6□□□□□ -1.99
DEF1YKL054C YMR001C-AQ8TGS9 76 aa2.6□□□□□ -1.99
DEF1YKL054C YLR157W-DP0CE99 70 aa2.57□□□□□ -2
DEF1YKL054C VMR1P38735 1592 aa2.57□□□□□ -2
DEF1YKL054C PDR15Q04182 1529 aaKnown RBP2.56□□□□□ -2
DEF1YKL054C YOR011W-AQ3E807 68 aa2.54□□□□□ -2
DEF1YKL054C IRC20Q06554 1556 aa2.53□□□□□ -2
DEF1YKL054C ULS1Q08562 1619 aa2.53□□□□□ -2
DEF1YKL054C SNF2P22082 1703 aa2.53□□□□□ -2
DEF1YKL054C YOR394C-AQ8TGJ0 55 aa2.53□□□□□ -2
DEF1YKL054C USO1P25386 1790 aa2.52□□□□□ -2.01
DEF1YKL054C RPS27AP35997 82 aaKnown RBP2.52□□□□□ -2.01
DEF1YKL054C SEN1Q00416 2231 aaKnown RBP2.51□□□□□ -2.01
DEF1YKL054C PRP8P33334 2413 aaKnown RBP2.48□□□□□ -2.01
DEF1YKL054C NUP188P52593 1655 aaKnown RBP2.48□□□□□ -2.01
DEF1YKL054C YFR009W-AP0C5M9 85 aa2.47□□□□□ -2.01
DEF1YKL054C OLI1P61829 76 aa2.44□□□□□ -2.02
DEF1YKL054C KOG1P38873 1557 aa2.43□□□□□ -2.02
DEF1YKL054C YBR016WP38216 128 aa2.42□□□□□ -2.02
DEF1YKL054C RPL37BP51402 88 aaKnown RBP2.42□□□□□ -2.02
DEF1YKL054C YGR025WP53216 100 aa2.35□□□□□ -2.03
DEF1YKL054C STU1P38198 1513 aa2.34□□□□□ -2.03
DEF1YKL054C NUP192P47054 1683 aa2.29□□□□□ -2.04
DEF1YKL054C YBL044WP38194 122 aa2.29□□□□□ -2.04
DEF1YKL054C THO2P53552 1597 aaKnown RBP2.29□□□□□ -2.04
DEF1YKL054C SIP18P50263 79 aa2.29□□□□□ -2.04
DEF1YKL054C RKR1Q04781 1562 aa2.26□□□□□ -2.05
DEF1YKL054C RPS27BP38711 82 aa2.26□□□□□ -2.05
DEF1YKL054C YPR010C-AA5Z2X5 72 aa2.25□□□□□ -2.05
DEF1YKL054C YBR230W-AQ3E762 66 aa2.25□□□□□ -2.05
DEF1YKL054C NUP170P38181 1502 aa2.21□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms