RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 FBXO32Q969P5 355 aa18.99■□□□□ 0.63
CIITA-215ENST00000637439 DHX58Q96C10 678 aa18.99■□□□□ 0.63
CIITA-215ENST00000637439 ZNF396Q96N95 335 aaPredicted RBP18.99■□□□□ 0.63
CIITA-215ENST00000637439 C7orf25Q9BPX7 421 aa18.99■□□□□ 0.63
CIITA-215ENST00000637439 B3GNT5Q9BYG0 378 aa18.99■□□□□ 0.63
CIITA-215ENST00000637439 DPEP3Q9H4B8 488 aa18.99■□□□□ 0.63
CIITA-215ENST00000637439 NXF1Q9UBU9 619 aaKnown RBP18.99■□□□□ 0.63
CIITA-215ENST00000637439 EVLQ9UI08 416 aaPredicted RBP18.99■□□□□ 0.63
CIITA-215ENST00000637439 TNFRSF10BO14763 440 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 CLIC2O15247 247 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 PHACTR2O75167 634 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 PROS1P07225 676 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 CEACAM1P13688 526 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 CACNA2D1P54289 1103 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 MYL6P60660 151 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 GAD2Q05329 585 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 LMAN2Q12907 356 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 SH3PXD2AQ5TCZ1 1133 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 BTBD8Q5XKL5 378 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 NUDT18Q6ZVK8 323 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 UNC13DQ70J99 1090 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 KCNV2Q8TDN2 545 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 PIGKQ92643 395 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 DUSP9Q99956 384 aaKnown RBP18.98■□□□□ 0.63
CIITA-215ENST00000637439 TMEM30AQ9NV96 361 aa18.98■□□□□ 0.63
CIITA-215ENST00000637439 BCCIPQ9P287 314 aaKnown RBP eCLIP18.98■□□□□ 0.63
CIITA-215ENST00000637439 SGK1O00141 431 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 CLDN5O00501 218 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 CDX4O14627 284 aaPredicted RBP18.97■□□□□ 0.63
CIITA-215ENST00000637439 CUTAO60888 179 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 KIR2DL1P43626 348 aaPredicted RBP18.97■□□□□ 0.63
CIITA-215ENST00000637439 TUBP50607 506 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 AP3M2P53677 418 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 IRX4P78413 519 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 ZNF252P-AS1Q0IIN9 211 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 LY6G5CQ5SRR4 150 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 HECTD3Q5T447 861 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 SNX30Q5VWJ9 437 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 TRMT11Q7Z4G4 463 aaKnown RBP18.97■□□□□ 0.63
CIITA-215ENST00000637439 NELFCDQ8IXH7 590 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 C12orf56Q8IXR9 622 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 SCFD1Q8WVM8 642 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 ZNF516Q92618 1163 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 TNIP3Q96KP6 325 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 NUSAP1Q9BXS6 441 aaKnown RBP18.97■□□□□ 0.63
CIITA-215ENST00000637439 XYLT2Q9H1B5 865 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 VRTNQ9H8Y1 702 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 COMMD8Q9NX08 183 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 CIZ1Q9ULV3 898 aaPredicted RBP18.97■□□□□ 0.63
CIITA-215ENST00000637439 SH3BP1Q9Y3L3 701 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 CHD6Q8TD26 2715 aa18.97■□□□□ 0.63
CIITA-215ENST00000637439 ANTXRLA6NF34 631 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 PATE3B3GLJ2 98 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 SCAMP3O14828 347 aaKnown RBP18.96■□□□□ 0.63
CIITA-215ENST00000637439 COCHO43405 550 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 YEATS4O95619 227 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 HNRNPLP14866 589 aaKnown RBP eCLIP18.96■□□□□ 0.63
CIITA-215ENST00000637439 KDSRQ06136 332 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 EHHADHQ08426 723 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 BMT2Q1RMZ1 405 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 C12orf40Q86WS4 652 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 SYT12Q8IV01 421 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 GOLGA5Q8TBA6 731 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 SMARCD1Q96GM5 515 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 MED10Q9BTT4 135 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 DMAP1Q9NPF5 467 aaPredicted RBP18.96■□□□□ 0.63
CIITA-215ENST00000637439 CFAP47Q6ZTR5 3102 aa18.96■□□□□ 0.63
CIITA-215ENST00000637439 TBC1D3BA6NDS4 549 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 GIPC1O14908 333 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 HOXC11O43248 304 aaPredicted RBP18.95■□□□□ 0.62
CIITA-215ENST00000637439 EXOC3O60645 756 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 CLSTN1O94985 981 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 CHRM1P11229 460 aaPredicted RBP18.95■□□□□ 0.62
CIITA-215ENST00000637439 MESP2Q0VG99 397 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 BIRC3Q13489 604 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 ZNF699Q32M78 642 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 TRIM61Q5EBN2 209 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 ZNF667Q5HYK9 610 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 EMC10Q5UCC4 262 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 FAM35AQ86V20 835 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 SFTPA1Q8IWL2 248 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 PGBD3Q8N328 593 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 HMGB4Q8WW32 186 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 RLN3Q8WXF3 142 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 ZFRQ96KR1 1074 aaKnown RBP18.95■□□□□ 0.62
CIITA-215ENST00000637439 KCNK16Q96T55 309 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 GZF1Q9H116 711 aaPredicted RBP18.95■□□□□ 0.62
CIITA-215ENST00000637439 IL37Q9NZH6 218 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 DEC1Q9P2X7 70 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 TFIP11Q9UBB9 837 aaKnown RBP18.95■□□□□ 0.62
CIITA-215ENST00000637439 CHORDC1Q9UHD1 332 aaPredicted RBP18.95■□□□□ 0.62
CIITA-215ENST00000637439 PLXND1Q9Y4D7 1925 aa18.95■□□□□ 0.62
CIITA-215ENST00000637439 MYOFQ9NZM1 2061 aa18.94■□□□□ 0.62
CIITA-215ENST00000637439 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.94■□□□□ 0.62
CIITA-215ENST00000637439 PVALEFA0A1B0GWK0 134 aa18.94■□□□□ 0.62
CIITA-215ENST00000637439 TCRBV21S2A2A0A5A6 115 aa18.94■□□□□ 0.62
CIITA-215ENST00000637439 ADAM23O75077 832 aa18.94■□□□□ 0.62
CIITA-215ENST00000637439 HOXD12P35452 270 aa18.94■□□□□ 0.62
CIITA-215ENST00000637439 SLC5A3P53794 718 aa18.94■□□□□ 0.62
CIITA-215ENST00000637439 FOXC1Q12948 553 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms