RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 GPR161Q8N6U8 529 aaKnown RBP16.6■□□□□ 0.25
CDH3-204ENST00000565453 WHAMMQ8TF30 809 aa16.6■□□□□ 0.25
CDH3-204ENST00000565453 SECISBP2LQ93073 1101 aaKnown RBP16.6■□□□□ 0.25
CDH3-204ENST00000565453 EXOC4Q96A65 974 aa16.6■□□□□ 0.25
CDH3-204ENST00000565453 NIF3L1Q9GZT8 377 aa16.6■□□□□ 0.25
CDH3-204ENST00000565453 CYP3A43Q9HB55 503 aa16.6■□□□□ 0.25
CDH3-204ENST00000565453 TMEM8AQ9HCN3 771 aa16.6■□□□□ 0.25
CDH3-204ENST00000565453 FAM49BQ9NUQ9 324 aa16.6■□□□□ 0.25
CDH3-204ENST00000565453 POLR3BQ9NW08 1133 aaPredicted RBP16.6■□□□□ 0.25
CDH3-204ENST00000565453 CHORDC1Q9UHD1 332 aaPredicted RBP16.6■□□□□ 0.25
CDH3-204ENST00000565453 GMEB2Q9UKD1 530 aa16.6■□□□□ 0.25
CDH3-204ENST00000565453 MYO16Q9Y6X6 1858 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 CCDC163A0A0D9SF12 145 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 COCHO43405 550 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 CILPO75339 1184 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 MBL2P11226 248 aaPredicted RBP16.59■□□□□ 0.25
CDH3-204ENST00000565453 GTF2H1P32780 548 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 PGFP49763 221 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 BECN1Q14457 450 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 HECTD3Q5T447 861 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 PRR23BQ6ZRT6 265 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 ERMP1Q7Z2K6 904 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 SPATA20Q8TB22 786 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 HNRNPABQ99729 332 aaKnown RBP16.59■□□□□ 0.25
CDH3-204ENST00000565453 DLL3Q9NYJ7 618 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 GMIPQ9P107 970 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 CFAP97Q9P2B7 532 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 RAB23Q9ULC3 237 aa16.59■□□□□ 0.25
CDH3-204ENST00000565453 HHLA1C9JL84 531 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 SLC9A3R1O14745 358 aaPredicted RBP16.58■□□□□ 0.24
CDH3-204ENST00000565453 SCAMP3O14828 347 aaKnown RBP16.58■□□□□ 0.24
CDH3-204ENST00000565453 RETP07949 1114 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 PRCPP42785 496 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 PXNP49023 591 aaPredicted RBP16.58■□□□□ 0.24
CDH3-204ENST00000565453 TUBP50607 506 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 MAP3K7CLP57077 242 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 NUCB2P80303 420 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 DHCR24Q15392 516 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 KRT39Q6A163 491 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 CLEC20AQ6ZU45 233 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 DDX42Q86XP3 938 aaKnown RBP eCLIP16.58■□□□□ 0.24
CDH3-204ENST00000565453 ZC3H3Q8IXZ2 948 aaKnown RBP16.58■□□□□ 0.24
CDH3-204ENST00000565453 CAMKK1Q8N5S9 505 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 RPLP0P6Q8NHW5 317 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 SEMA4DQ92854 862 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 EEF2KMTQ96G04 330 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 CCDC34Q96HJ3 373 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 IMPG2Q9BZV3 1241 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 CCSER2Q9H7U1 834 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 MMRN2Q9H8L6 949 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 SLC8A2Q9UPR5 921 aa16.58■□□□□ 0.24
CDH3-204ENST00000565453 E2F8A0AVK6 867 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 ANTXRLA6NF34 631 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 K7EQS6 105 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 CHRM1P11229 460 aaPredicted RBP16.57■□□□□ 0.24
CDH3-204ENST00000565453 ADORA2BP29275 332 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 FOXK2Q01167 660 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 ZNF658Q5TYW1 1059 aaPredicted RBP16.57■□□□□ 0.24
CDH3-204ENST00000565453 RHBDF2Q6PJF5 856 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 SYT13Q7L8C5 426 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 GPRIN1Q7Z2K8 1008 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 WBP2Q969T9 261 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 CYFIP2Q96F07 1278 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 GSDMAQ96QA5 445 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 DUSP9Q99956 384 aaKnown RBP16.57■□□□□ 0.24
CDH3-204ENST00000565453 NT5C1AQ9BXI3 368 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 RMND1Q9NWS8 449 aa16.57■□□□□ 0.24
CDH3-204ENST00000565453 CETN3O15182 167 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 LRP3O75074 770 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 FAM200BP0CF97 657 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 CD58P19256 250 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 MXI1P50539 228 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 PMS1P54277 932 aaKnown RBP16.56■□□□□ 0.24
CDH3-204ENST00000565453 SPEM2Q0P670 501 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 MESP2Q0VG99 397 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 PUM1Q14671 1186 aaKnown RBP eCLIP16.56■□□□□ 0.24
CDH3-204ENST00000565453 RSPO4Q2I0M5 234 aaPredicted RBP16.56■□□□□ 0.24
CDH3-204ENST00000565453 C12orf40Q86WS4 652 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 FAM160A2Q8N612 972 aaPredicted RBP16.56■□□□□ 0.24
CDH3-204ENST00000565453 USP33Q8TEY7 942 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 GAB3Q8WWW8 586 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 ERCC4Q92889 916 aaPredicted RBP16.56■□□□□ 0.24
CDH3-204ENST00000565453 FAXDC2Q96IV6 333 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 TIGD1Q96MW7 591 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 HHIPQ96QV1 700 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 FBXO44Q9H4M3 255 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 PNPLA8Q9NP80 782 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 TBC1D14Q9P2M4 693 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 SCML2Q9UQR0 700 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 PCDHA5Q9Y5H7 936 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 ATG2BQ96BY7 2078 aa16.56■□□□□ 0.24
CDH3-204ENST00000565453 TLR5O60602 858 aa16.55■□□□□ 0.24
CDH3-204ENST00000565453 EPB41P11171 864 aaKnown RBP16.55■□□□□ 0.24
CDH3-204ENST00000565453 EIF2DP41214 584 aaKnown RBP16.55■□□□□ 0.24
CDH3-204ENST00000565453 SLC6A11P48066 632 aa16.55■□□□□ 0.24
CDH3-204ENST00000565453 LMNB2Q03252 620 aa16.55■□□□□ 0.24
CDH3-204ENST00000565453 DMC1Q14565 340 aa16.55■□□□□ 0.24
CDH3-204ENST00000565453 ANKRD40Q6AI12 368 aa16.55■□□□□ 0.24
CDH3-204ENST00000565453 CEP68Q76N32 757 aa16.55■□□□□ 0.24
CDH3-204ENST00000565453 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms