RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 BBS12Q6ZW61 710 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 SND1Q7KZF4 910 aaKnown RBP eCLIP14.06□□□□□ -0.16
PTCH1-215ENST00000547672 BZW1Q7L1Q6 419 aaKnown RBP14.06□□□□□ -0.16
PTCH1-215ENST00000547672 BEND5Q7L4P6 421 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 GSTA5Q7RTV2 222 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 FAM35AQ86V20 835 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 SPATA2LQ8IUW3 424 aaPredicted RBP14.06□□□□□ -0.16
PTCH1-215ENST00000547672 FAM172AQ8WUF8 416 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 CASKIN2Q8WXE0 1202 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 PCED1BQ96HM7 432 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 FUBP3Q96I24 572 aaKnown RBP eCLIP14.06□□□□□ -0.16
PTCH1-215ENST00000547672 RUFY1Q96T51 708 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 SLC9A7Q96T83 725 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 HEMGNQ9BXL5 484 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 FOXP3Q9BZS1 431 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 POPDC2Q9HBU9 364 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 DMAP1Q9NPF5 467 aaPredicted RBP14.06□□□□□ -0.16
PTCH1-215ENST00000547672 CRTAC1Q9NQ79 661 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 KRT82Q9NSB4 513 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 WHRNQ9P202 907 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 NFU1Q9UMS0 254 aa14.06□□□□□ -0.16
PTCH1-215ENST00000547672 hCG_1818297A0A087WSY0 165 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 CAPN9O14815 690 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 DAB1O75553 588 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 TKTL1P51854 596 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 MAP3K7CLP57077 242 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 TLE2Q04725 743 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 BYSLQ13895 437 aaKnown RBP14.05□□□□□ -0.16
PTCH1-215ENST00000547672 SLMAPQ14BN4 828 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 AADACL2Q6P093 401 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 SCYL2Q6P3W7 929 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 CNKSR3Q6P9H4 555 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 PAQR9Q6ZVX9 377 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 CROCCP2Q86T23 111 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 C3orf58Q8NDZ4 430 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.05□□□□□ -0.16
PTCH1-215ENST00000547672 FAM149B1Q96BN6 582 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 ARMC5Q96C12 935 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 HAUS1Q96CS2 278 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 ZNF333Q96JL9 665 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 NGRNQ9NPE2 291 aaKnown RBP14.05□□□□□ -0.16
PTCH1-215ENST00000547672 TMEM39AQ9NV64 488 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 FAM53CQ9NYF3 392 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 RCOR3Q9P2K3 495 aaPredicted RBP14.05□□□□□ -0.16
PTCH1-215ENST00000547672 TJP2Q9UDY2 1190 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 PCSK1NQ9UHG2 260 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 ZNF148Q9UQR1 794 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 NR2E1Q9Y466 385 aa14.05□□□□□ -0.16
PTCH1-215ENST00000547672 TIMM13Q9Y5L4 95 aaPredicted RBP14.05□□□□□ -0.16
PTCH1-215ENST00000547672 ABHD14A-ACY1A0A1B0GW23 586 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 MYBPHLA2RUH7 354 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 PI4K2BG5E9Z4 385 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 SMAPO00193 183 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 TULP2O00295 520 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 DAPK3O43293 454 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 DDHD2O94830 711 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 ENDOD1O94919 500 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 ZBED1O96006 694 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 ITGAVP06756 1048 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 STIP1P31948 543 aaKnown RBP14.04□□□□□ -0.16
PTCH1-215ENST00000547672 FLT3P36888 993 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 BRCC3P46736 316 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 GJA8P48165 433 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 ATP11AP98196 1134 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 ADIGQ0VDE8 80 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 FAAP100Q0VG06 881 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 PTK6Q13882 451 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 RAB41Q5JT25 222 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 KAZNQ674X7 775 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 VSTM1Q6UX27 236 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 C4orf22Q6V702 233 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 PCGF5Q86SE9 256 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 CPNE8Q86YQ8 564 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 RFX6Q8HWS3 928 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 ARHGAP18Q8N392 663 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 C2orf15Q8WU43 125 aaKnown RBP14.04□□□□□ -0.16
PTCH1-215ENST00000547672 C1orf54Q8WWF1 131 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 LINC01599Q8WXQ3 324 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 RAPGEF5Q92565 580 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 HSPH1Q92598 858 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 KHSRPQ92945 711 aaKnown RBP eCLIP14.04□□□□□ -0.16
PTCH1-215ENST00000547672 NKD2Q969F2 451 aaPredicted RBP14.04□□□□□ -0.16
PTCH1-215ENST00000547672 CCDC114Q96M63 670 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 CASD1Q96PB1 797 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 FMO2Q99518 471 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 FERMT1Q9BQL6 677 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 PAAF1Q9BRP4 392 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 CALN1Q9BXU9 219 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 STK39Q9UEW8 545 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 ADAM28Q9UKQ2 775 aa14.04□□□□□ -0.16
PTCH1-215ENST00000547672 SF3B1O75533 1304 aaKnown RBP eCLIP14.04□□□□□ -0.164e-7■■■■■ 133.7
PTCH1-215ENST00000547672 GOLGA6BA6NDN3 693 aa14.03□□□□□ -0.16
PTCH1-215ENST00000547672 PIK3R2O00459 728 aa14.03□□□□□ -0.16
PTCH1-215ENST00000547672 CLDN5O00501 218 aa14.03□□□□□ -0.16
PTCH1-215ENST00000547672 TRIM66O15016 1216 aa14.03□□□□□ -0.16
PTCH1-215ENST00000547672 LIASO43766 372 aa14.03□□□□□ -0.16
PTCH1-215ENST00000547672 GRAP2O75791 330 aa14.03□□□□□ -0.16
PTCH1-215ENST00000547672 ATF2P15336 505 aa14.03□□□□□ -0.16
PTCH1-215ENST00000547672 TGM2P21980 687 aa14.03□□□□□ -0.16
PTCH1-215ENST00000547672 TKTP29401 623 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms