RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 SESN3P58005 492 aa7□□□□□ -1.29
USP28-207ENST00000538475 SNRPFP62306 86 aaKnown RBP7□□□□□ -1.29
USP28-207ENST00000538475 BTG3Q14201 252 aaPredicted RBP7□□□□□ -1.29
USP28-207ENST00000538475 CTTNQ14247 550 aaKnown RBP7□□□□□ -1.29
USP28-207ENST00000538475 DRAP1Q14919 205 aaPredicted RBP7□□□□□ -1.29
USP28-207ENST00000538475 MORF4L2Q15014 288 aa7□□□□□ -1.29
USP28-207ENST00000538475 SF3B3Q15393 1217 aaKnown RBP7□□□□□ -1.29
USP28-207ENST00000538475 BCL2A1Q16548 175 aa7□□□□□ -1.29
USP28-207ENST00000538475 KLHL38Q2WGJ6 581 aa7□□□□□ -1.29
USP28-207ENST00000538475 CCDC153Q494R4 210 aa7□□□□□ -1.29
USP28-207ENST00000538475 GRAMD4Q6IC98 578 aa7□□□□□ -1.29
USP28-207ENST00000538475 RFWD3Q6PCD5 774 aa7□□□□□ -1.29
USP28-207ENST00000538475 UGT2A3Q6UWM9 527 aa7□□□□□ -1.29
USP28-207ENST00000538475 KBTBD2Q8IY47 623 aa7□□□□□ -1.29
USP28-207ENST00000538475 GJD3Q8N144 294 aa7□□□□□ -1.29
USP28-207ENST00000538475 TERB1Q8NA31 727 aa7□□□□□ -1.29
USP28-207ENST00000538475 GAB3Q8WWW8 586 aa7□□□□□ -1.29
USP28-207ENST00000538475 PSPC1Q8WXF1 523 aaKnown RBP7□□□□□ -1.29
USP28-207ENST00000538475 FAM89AQ96GI7 184 aa7□□□□□ -1.29
USP28-207ENST00000538475 OXNAD1Q96HP4 312 aaPredicted RBP7□□□□□ -1.29
USP28-207ENST00000538475 C7orf26Q96N11 449 aa7□□□□□ -1.29
USP28-207ENST00000538475 OSMRQ99650 979 aa7□□□□□ -1.29
USP28-207ENST00000538475 TCHPQ9BT92 498 aa7□□□□□ -1.29
USP28-207ENST00000538475 TSSK1BQ9BXA7 367 aa7□□□□□ -1.29
USP28-207ENST00000538475 FRMD8P1Q9BZ68 369 aaPredicted RBP7□□□□□ -1.29
USP28-207ENST00000538475 DCLK3Q9C098 648 aa7□□□□□ -1.29
USP28-207ENST00000538475 WWP1Q9H0M0 922 aa7□□□□□ -1.29
USP28-207ENST00000538475 RBM38Q9H0Z9 239 aaKnown RBP7□□□□□ -1.29
USP28-207ENST00000538475 MANSC1Q9H8J5 431 aa7□□□□□ -1.29
USP28-207ENST00000538475 KIAA1586Q9HCI6 787 aa7□□□□□ -1.29
USP28-207ENST00000538475 OSGEPQ9NPF4 335 aa7□□□□□ -1.29
USP28-207ENST00000538475 DZANK1Q9NVP4 752 aa7□□□□□ -1.29
USP28-207ENST00000538475 NLRP2Q9NX02 1062 aa7□□□□□ -1.29
USP28-207ENST00000538475 UBAP1Q9NZ09 502 aa7□□□□□ -1.29
USP28-207ENST00000538475 HACD3Q9P035 362 aa7□□□□□ -1.29
USP28-207ENST00000538475 C6orf203Q9P0P8 240 aaPredicted RBP7□□□□□ -1.29
USP28-207ENST00000538475 DNAJC12Q9UKB3 198 aa7□□□□□ -1.29
USP28-207ENST00000538475 CNOT11Q9UKZ1 510 aaKnown RBP7□□□□□ -1.29
USP28-207ENST00000538475 G3BP2Q9UN86 482 aaKnown RBP7□□□□□ -1.29
USP28-207ENST00000538475 SHOC2Q9UQ13 582 aa7□□□□□ -1.29
USP28-207ENST00000538475 CHMP2BQ9UQN3 213 aa7□□□□□ -1.29
USP28-207ENST00000538475 DRG1Q9Y295 367 aaKnown RBP7□□□□□ -1.29
USP28-207ENST00000538475 NEU2Q9Y3R4 380 aa7□□□□□ -1.29
USP28-207ENST00000538475 NUB1Q9Y5A7 615 aa7□□□□□ -1.29
USP28-207ENST00000538475 AK5Q9Y6K8 562 aa7□□□□□ -1.29
USP28-207ENST00000538475 ZHX2Q9Y6X8 837 aa7□□□□□ -1.29
USP28-207ENST00000538475 SPATA31A6Q5VVP1 1343 aa7□□□□□ -1.29
USP28-207ENST00000538475 DDX60LQ5H9U9 1706 aaKnown RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 CYP3A7-CYP3A51PA0A087WV96 503 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 GSTTP1A0A1W2PQM5 241 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 CFAP69A5D8W1 941 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 TMEM247A6NEH6 219 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 CAPN14A8MX76 684 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 B2RBV5 119 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 KLRF2D3W0D1 207 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 VILLO15195 856 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 SPOPO43791 374 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 RNASEH1O60930 286 aaKnown RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 SPAG6O75602 509 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 TRMUO75648 421 aaKnown RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 TRPA1O75762 1119 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 BAIAP3O94812 1187 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 KLHL2O95198 593 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 ESRRBO95718 433 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 ZBED1O96006 694 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 C8BP07358 591 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 ZCCHC18P0CG32 403 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 PYGMP11217 842 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 CYP11B2P19099 503 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 COMTP21964 271 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 CYP3A7P24462 503 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 PRDX6P30041 224 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 PPARGP37231 505 aaPredicted RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 IGHMBP2P38935 993 aaKnown RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 ADCY8P40145 1251 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 MLH1P40692 756 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 NOVP48745 357 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 FMO5P49326 533 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 ADCY7P51828 1080 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 MTTPP55157 894 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 TUBA4AP68366 448 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 ENPEPQ07075 957 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 TBL3Q12788 808 aaKnown RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 ZBTB17Q13105 803 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 KRT81Q14533 505 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 PDK3Q15120 406 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 PRKD1Q15139 912 aaPredicted RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 LRRC41Q15345 812 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 TMED2Q15363 201 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 INAQ16352 499 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 CLPPQ16740 277 aaPredicted RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 RSPO4Q2I0M5 234 aaPredicted RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 MMEL1Q495T6 779 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 ATG16L1Q676U5 607 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 SPTY2D1Q68D10 685 aaPredicted RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 ZFP1Q6P2D0 407 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 LVRNQ6Q4G3 990 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 PATL1Q86TB9 770 aaKnown RBP6.99□□□□□ -1.29
USP28-207ENST00000538475 RSPH3Q86UC2 560 aa6.99□□□□□ -1.29
USP28-207ENST00000538475 GPBP1Q86WP2 473 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms