RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 BACE1P56817 501 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 YWHAGP61981 247 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 FAM209AQ5JX71 171 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 ITPRIPL1Q6GPH6 555 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 LRRC55Q6ZSA7 311 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 UBE2Q1Q7Z7E8 422 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 DGKHQ86XP1 1220 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 KIAA2013Q8IYS2 634 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 DENND1AQ8TEH3 1009 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 HPS3Q969F9 1004 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 CEP295NLQ96MC4 621 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 RBM15Q96T37 977 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 INPP5FQ9Y2H2 1132 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 MYH14Q7Z406 1995 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 XPO1O14980 1071 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 TGDSO95455 350 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 ABHD2P08910 425 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 MYL2P10916 166 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 TLR1Q15399 786 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 SGO2Q562F6 1265 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 FOXR2Q6PJQ5 311 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 ANKMY2Q8IV38 441 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 CLPTM1LQ96KA5 538 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 CENPOQ9BU64 300 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 ANLNQ9NQW6 1124 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 FEM1BQ9UK73 627 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 SOX13Q9UN79 622 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 TOGARAM1Q9Y4F4 1720 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 CAPN8A6NHC0 703 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 NOP56O00567 594 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 ATP2A1O14983 1001 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 NAT2P11245 290 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 TNFAIP3P21580 790 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 STAT3P40763 770 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 HSD17B4P51659 736 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 EPHB1P54762 984 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 RPS3AP61247 264 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 PHKG1Q16816 387 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 FAM47CQ5HY64 1035 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 FAM91A1Q658Y4 838 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 DYMQ7RTS9 669 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 POU5F2Q8N7G0 328 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 HIPK4Q8NE63 616 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 OR7G1Q8NGA0 311 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 NAP1L4Q99733 375 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 GANQ9H2C0 597 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 VPS37BQ9H9H4 285 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 PKD2L1Q9P0L9 805 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 ARMCX1Q9P291 453 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 NKRFO15226 690 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 NMT2O60551 498 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 NPM3O75607 178 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 POLR2MP0CAP2 368 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 ZNF23P17027 643 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 CHKAP35790 457 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 TRIP13Q15645 432 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 ASPRV1Q53RT3 343 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 DCAF12L1Q5VU92 463 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 KAZNQ674X7 775 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 TTC23LQ6PF05 361 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 KCTD1Q719H9 257 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 PRPF39Q86UA1 669 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 VGLL2Q8N8G2 317 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 GSTCDQ8NEC7 633 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 DPF3Q92784 378 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 HPS1Q92902 700 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 HHIPL1Q96JK4 782 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 DCUN1D5Q9BTE7 237 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 FOXP3Q9BZS1 431 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 C6orf203Q9P0P8 240 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 KLHL3Q9UH77 587 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 PCDHA4Q9UN74 947 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 PCDHB2Q9Y5E7 798 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 AQP9O43315 295 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 CHRNB1P11230 501 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 UCHL3P15374 230 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 CYP4A11Q02928 519 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 TTC27Q6P3X3 843 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 FBXL19Q6PCT2 694 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 ISLR2Q6UXK2 745 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 IRF2BP2Q7Z5L9 587 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 AMIGO2Q86SJ2 522 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 RNF169Q8NCN4 708 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 TAMM41Q96BW9 452 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 RILPQ96NA2 401 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 CTRCQ99895 268 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 TRIM56Q9BRZ2 755 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 HTATIP2Q9BUP3 242 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 OSGEPQ9NPF4 335 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 AP4S1Q9Y587 144 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 KBTBD13C9JR72 458 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 ANKRD63C9JTQ0 380 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 ATP5BP06576 529 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 PSMC3P17980 439 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 HOXD13P35453 343 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 SLC16A2P36021 539 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 ARL4CP56559 192 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 DLG4P78352 724 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 ADAM17P78536 824 aa11.29□□□□□ -0.6
CLSTN3-207ENST00000537408 SUZ12Q15022 739 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms