RNA–Protein interactions for RNA: ENST00000509206.1

RNF4-211, Transcript of ring finger protein 4, human

TSL 3

Gene RNF4, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-211	ENST00000509206	SLC6A11	P48066	632 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	CSNK1E	P49674	416 aa	Known RBP	4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	CLDN6	P56747	220 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	OSTN	P61366	133 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	TLE1	Q04724	770 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	KDSR	Q06136	332 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	REST	Q13127	1097 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	DMP1	Q13316	513 aa	Predicted RBP	4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	CTTN	Q14247	550 aa	Known RBP	4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	MYBPC2	Q14324	1141 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	ZNF268	Q14587	947 aa	Predicted RBP	4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	NAB2	Q15742	525 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	C11orf91	Q3C1V1	193 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206		Q4G0T1	1027 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	DCAF12L1	Q5VU92	463 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	BTBD8	Q5XKL5	378 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	XKR5	Q6UX68	686 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	CD300LG	Q6UXG3	332 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	DBX2	Q6ZNG2	339 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	MON1A	Q86VX9	555 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	C4orf19	Q8IY42	314 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	ZNF295-AS1	Q8N0V1	137 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	FAM26E	Q8N5C1	309 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	MEIOB	Q8N635	442 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	FSIP1	Q8NA03	581 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	NSUN7	Q8NE18	718 aa	Known RBP	4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	DEPTOR	Q8TB45	409 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	RUFY2	Q8WXA3	655 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	ERLEC1	Q96DZ1	483 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	CNDP2	Q96KP4	475 aa	Known RBP	4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	SUSD3	Q96L08	255 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	ACAP3	Q96P50	834 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	LXN	Q9BS40	222 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	TCHP	Q9BT92	498 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	MTA3	Q9BTC8	594 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	GPR174	Q9BXC1	333 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	NFKBIZ	Q9BYH8	718 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	C22orf23	Q9BZE7	217 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	DPH1	Q9BZG8	443 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	PHACTR1	Q9C0D0	580 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	POLR3F	Q9H1D9	316 aa	Predicted RBP	4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	CXCL16	Q9H2A7	254 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	LINC00597	Q9H2U6	94 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	PDZD7	Q9H5P4	517 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	TTC12	Q9H892	705 aa	Predicted RBP	4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	RPF1	Q9H9Y2	349 aa	Known RBP	4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	ZDHHC4	Q9NPG8	344 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	CLCA2	Q9UQC9	943 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	MAN2B2	Q9Y2E5	1009 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	BTBD3	Q9Y2F9	522 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	PCDHB6	Q9Y5E3	794 aa		4.17	□□□□□ -1.74
RNF4-211	ENST00000509206	E2F8	A0AVK6	867 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	MTMR11	A4FU01	709 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	GOLGA8A	A7E2F4	631 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	GOLGA8B	A8MQT2	603 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	BTBD18	B2RXH4	712 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ACKR2	O00590	384 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	KCNK3	O14649	394 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	SLC9A3R1	O14745	358 aa	Predicted RBP	4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ZBTB39	O15060	712 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ZBTB43	O43298	467 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	SUV39H1	O43463	412 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	FZD6	O60353	706 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	OAZ2	O95190	189 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ITGAV	P06756	1048 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	CSH1	P0DML2	217 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	CSH2	P0DML3	217 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ACADM	P11310	421 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	GABRG2	P18507	467 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	HDC	P19113	662 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ATP2B1	P20020	1258 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	GLRA2	P23416	452 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ELAVL4	P26378	380 aa	Known RBP	4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	RBMS1	P29558	406 aa	Known RBP	4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	NMT1	P30419	496 aa	Known RBP	4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	OXTR	P30559	389 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	NTSR1	P30989	418 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	GPC1	P35052	558 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ARL2	P36404	184 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	OPRD1	P41143	372 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	TNFSF9	P41273	254 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	LIFR	P42702	1097 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	PLA2G4A	P47712	749 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	PDE6C	P51160	858 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	AFF3	P51826	1226 aa	Known RBP	4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	CDR1	P51861	262 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	C21orf59	P57076	290 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ANTXR2	P58335	489 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	NLRP12	P59046	1061 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	IL9R	Q01113	521 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	TAGLN	Q01995	201 aa	Known RBP	4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	DNAJC3	Q13217	504 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	KCNB1	Q14721	858 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	NOLC1	Q14978	699 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	NCAPH	Q15003	741 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	EPHA7	Q15375	998 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	KIF19	Q2TAC6	998 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ZSCAN23	Q3MJ62	389 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	SLC39A12	Q504Y0	691 aa		4.16	□□□□□ -1.74
RNF4-211	ENST00000509206	ATF7IP2	Q5U623	682 aa		4.16	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms