RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 FAM71AQ8IYT1 594 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ABRAQ8N0Z2 381 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 C4orf33Q8N1A6 199 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HELQQ8TDG4 1101 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GRK7Q8WTQ7 553 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FAF2Q96CS3 445 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ZNF570Q96NI8 536 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FAM192AQ9GZU8 254 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 UBN1Q9NPG3 1134 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SMYD2Q9NRG4 433 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 UVRAGQ9P2Y5 699 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 IP6K2Q9UHH9 426 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 C2CD2LO14523 706 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TREHO43280 583 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RECQL4O94761 1208 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CCDC130P13994 396 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 EPHB2P29323 1055 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ARFIP2P53365 341 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 EPHB1P54762 984 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NRLP54845 237 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TMC3Q7Z5M5 1100 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SAMD3Q8N6K7 520 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DNAAF3Q8N9W5 541 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 USP33Q8TEY7 942 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PYROXD1Q8WU10 500 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 WDR60Q8WVS4 1066 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GFM2Q969S9 779 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MPP4Q96JB8 637 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CATSPER2Q96P56 530 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ACO2Q99798 780 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DDX50Q9BQ39 737 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BEGAINQ9BUH8 593 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ABHD16BQ9H3Z7 469 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DHX33Q9H6R0 707 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 E7ENQ6 273 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BNIP3LO60238 219 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BANF1O75531 89 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ETS2P15036 469 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ACO1P21399 889 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TNFRSF8P28908 595 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CHRNA3P32297 505 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ZNF268Q14587 947 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RABGAP1LQ5R372 815 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BRSK2Q8IWQ3 736 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 EXOC8Q8IYI6 725 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HACE1Q8IYU2 909 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GAD1Q99259 594 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FERMT1Q9BQL6 677 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NPHS2Q9NP85 383 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ARHGAP28Q9P2N2 729 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TSPAN16Q9UKR8 245 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SPECC1L-ADORA2AF8WAN1 911 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 P4HA2O15460 535 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PJA2O43164 708 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HNRNPRO43390 633 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PYGBP11216 843 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MX2P20592 715 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HOXA7P31268 230 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 COILP38432 576 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PRKCIP41743 596 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TAS2R40P59535 323 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 KLC3Q6P597 504 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SPATA18Q8TC71 538 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SLC26A7Q8TE54 656 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 LZICQ8WZA0 190 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DMAC2Q9NW81 257 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HMGXB4Q9UGU5 601 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 COMMD10Q9Y6G5 202 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 A0A0B4J269 797 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PHF2O75151 1096 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RBP3P10745 1247 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ATP6V1B1P15313 513 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TCF4P15884 667 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SMPD1P17405 629 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SP100P23497 879 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GNL1P36915 607 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 EIF3EP60228 445 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PTPN11Q06124 597 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MCL1Q07820 350 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 AP1B1Q10567 949 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DHX34Q14147 1143 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 EDEM1Q92611 657 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RBM15Q96T37 977 aaKnown RBP eCLIP11.17□□□□□ -0.624e-7■■■□□ 15.4
MSH5-SAPCD1-207ENST00000493662 EIF2AQ9BY44 585 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ZFYVE28Q9HCC9 887 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 XAB2Q9HCS7 855 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 A0A0G2JLL6 359 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 E5RJQ4 531 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NDC80O14777 642 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 KCNN4O15554 427 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SLC26A4O43511 780 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ENTPD5O75356 428 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MARSP56192 900 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SESN2P58004 480 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 COBLL1Q53SF7 1204 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PRRT2Q7Z6L0 340 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 APPL2Q8NEU8 664 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CFAP57Q96MR6 1250 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms