RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 CDH9Q9ULB4 789 aa8.76□□□□□ -1.01
USP39-216ENST00000490193 SLC6A14Q9UN76 642 aa8.76□□□□□ -1.01
USP39-216ENST00000490193 SNX9Q9Y5X1 595 aa8.76□□□□□ -1.01
USP39-216ENST00000490193 ZNF840PA6NDX5 716 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.75□□□□□ -1.01
USP39-216ENST00000490193 AP5Z1O43299 807 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 HCRTO43612 131 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 ZIC2O95409 532 aaPredicted RBP8.75□□□□□ -1.01
USP39-216ENST00000490193 BMP15O95972 392 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 ADH1CP00326 375 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 ITPKAP23677 461 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 DDIT3P35638 169 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 GRIA2P42262 883 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 SLC6A11P48066 632 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 USP46P62068 366 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 RBP5P82980 135 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 RESTQ13127 1097 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 L1TD1Q5T7N2 865 aaKnown RBP8.75□□□□□ -1.01
USP39-216ENST00000490193 SCARA3Q6AZY7 606 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 MCTP1Q6DN14 999 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 RHBDF2Q6PJF5 856 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 SLC36A4Q6YBV0 504 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 ARMCX6Q7L4S7 300 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 TRMT11Q7Z4G4 463 aaKnown RBP8.75□□□□□ -1.01
USP39-216ENST00000490193 C12orf40Q86WS4 652 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 SFR1Q86XK3 245 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 DDX42Q86XP3 938 aaKnown RBP eCLIP8.75□□□□□ -1.01
USP39-216ENST00000490193 SFTPA1Q8IWL2 248 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 ETFBKMTQ8IXQ9 262 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 HDDC3Q8N4P3 179 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 CSGALNACT2Q8N6G5 542 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 FRMD1Q8N878 549 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 KRI1Q8N9T8 703 aaKnown RBP8.75□□□□□ -1.01
USP39-216ENST00000490193 ZSWIM2Q8NEG5 633 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 HMGB4Q8WW32 186 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 MYLPFQ96A32 169 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 OTUB2Q96DC9 234 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 C8orf48Q96LL4 319 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 KIF2CQ99661 725 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 SYT15Q9BQS2 421 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 RNF38Q9H0F5 515 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 CRTAC1Q9NQ79 661 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 ARHGEF4Q9NR80 690 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 OLFML3Q9NRN5 406 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 DNAAF2Q9NVR5 837 aaKnown RBP8.75□□□□□ -1.01
USP39-216ENST00000490193 TBC1D14Q9P2M4 693 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 MAGEC2Q9UBF1 373 aaPredicted RBP8.75□□□□□ -1.01
USP39-216ENST00000490193 EXOC7Q9UPT5 735 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 CPQQ9Y646 472 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 PLXNB3Q9ULL4 1909 aa8.75□□□□□ -1.01
USP39-216ENST00000490193 ATXN2Q99700 1313 aaKnown RBP8.75□□□□□ -1.01
USP39-216ENST00000490193 SMG1Q96Q15 3661 aaKnown RBP8.75□□□□□ -1.01
USP39-216ENST00000490193 PTPRBP23467 1997 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 TCRBV21S2A2A0A5A6 115 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 E2F8A0AVK6 867 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 TRIM66O15016 1216 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 HOXC11O43248 304 aaPredicted RBP8.74□□□□□ -1.01
USP39-216ENST00000490193 OPHN1O60890 802 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 ATP2C2O75185 946 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 GJB3O75712 270 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 CFIP05156 583 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 ADH5P11766 374 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 CD59P13987 128 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 GAP43P17677 238 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 WARSP23381 471 aaKnown RBP8.74□□□□□ -1.01
USP39-216ENST00000490193 BDNFP23560 247 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 LMO2P25791 158 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 ATXN3P54252 364 aaPredicted RBP8.74□□□□□ -1.01
USP39-216ENST00000490193 FAM193AP78312 1265 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 GRIN1Q05586 938 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 GFPT1Q06210 699 aaPredicted RBP8.74□□□□□ -1.01
USP39-216ENST00000490193 KCNA1Q09470 495 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 MYO1EQ12965 1108 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 SLC14A1Q13336 389 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 ALCAMQ13740 583 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 PREPLQ4J6C6 727 aaPredicted RBP8.74□□□□□ -1.01
USP39-216ENST00000490193 EMC10Q5UCC4 262 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 TTC30AQ86WT1 665 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 MINDY1Q8N5J2 469 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 MYCBPAPQ8TBZ2 947 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 DNAJC19Q96DA6 116 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 SAAL1Q96ER3 474 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 PCED1BQ96HM7 432 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 ACCSQ96QU6 501 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 MTMR12Q9C0I1 747 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 CD248Q9HCU0 757 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 BCCIPQ9P287 314 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP39-216ENST00000490193 STK17AQ9UEE5 414 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 GPSM3Q9Y4H4 160 aa8.74□□□□□ -1.01
USP39-216ENST00000490193 IGHV1OR15-9A0A0B4J2B8 117 aa8.73□□□□□ -1.01
USP39-216ENST00000490193 A0A1W2PQD8 194 aa8.73□□□□□ -1.01
USP39-216ENST00000490193 F8VP50 259 aa8.73□□□□□ -1.01
USP39-216ENST00000490193 LCE2BO14633 110 aa8.73□□□□□ -1.01
USP39-216ENST00000490193 KIAA0391O15091 583 aaKnown RBP8.73□□□□□ -1.01
USP39-216ENST00000490193 SYPP08247 313 aa8.73□□□□□ -1.01
USP39-216ENST00000490193 KRT19P08727 400 aa8.73□□□□□ -1.01
USP39-216ENST00000490193 FAM163BP0C2L3 166 aa8.73□□□□□ -1.01
USP39-216ENST00000490193 TMEM191BP0C7N4 346 aa8.73□□□□□ -1.01
USP39-216ENST00000490193 GABRG2P18507 467 aa8.73□□□□□ -1.01
USP39-216ENST00000490193 ANXA13P27216 316 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms