RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 FAM186BQ8IYM0 893 aa17.29■□□□□ 0.36
COL9A3-208ENST00000469802 TAS1R2Q8TE23 839 aa17.29■□□□□ 0.36
COL9A3-208ENST00000469802 TWNKQ96RR1 684 aa17.29■□□□□ 0.36
COL9A3-208ENST00000469802 SMOQ99835 787 aa17.29■□□□□ 0.36
COL9A3-208ENST00000469802 APOBEC3GQ9HC16 384 aaKnown RBP17.29■□□□□ 0.36
COL9A3-208ENST00000469802 COMMD8Q9NX08 183 aa17.29■□□□□ 0.36
COL9A3-208ENST00000469802 PLXND1Q9Y4D7 1925 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 COCHO43405 550 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 AP1G2O75843 785 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 BEST1O76090 585 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 RETP07949 1114 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 PSMC2P35998 433 aaKnown RBP17.28■□□□□ 0.36
COL9A3-208ENST00000469802 GCLMP48507 274 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 NR1H3Q13133 447 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 PUM1Q14671 1186 aaKnown RBP eCLIP17.28■□□□□ 0.36
COL9A3-208ENST00000469802 DDX42Q86XP3 938 aaKnown RBP eCLIP17.28■□□□□ 0.36
COL9A3-208ENST00000469802 SMYD4Q8IYR2 804 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-208ENST00000469802 FMR1NBQ8N0W7 255 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-208ENST00000469802 SLC2A14Q8TDB8 520 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 MED10Q9BTT4 135 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 NIF3L1Q9GZT8 377 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 SMPD4Q9NXE4 827 aa17.28■□□□□ 0.36
COL9A3-208ENST00000469802 SLC9A3R1O14745 358 aaPredicted RBP17.27■□□□□ 0.36
COL9A3-208ENST00000469802 LRP3O75074 770 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 ABL1P00519 1130 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 CHRM1P11229 460 aaPredicted RBP17.27■□□□□ 0.36
COL9A3-208ENST00000469802 KRT13P13646 458 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 LMNB2Q03252 620 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 ADAM9Q13443 819 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 PNOCQ13519 176 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 COBLL1Q53SF7 1204 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 SYT13Q7L8C5 426 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 CAMKK1Q8N5S9 505 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 C12orf29Q8N999 325 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 RPLP0P6Q8NHW5 317 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 GAB3Q8WWW8 586 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 DUSP9Q99956 384 aaKnown RBP17.27■□□□□ 0.36
COL9A3-208ENST00000469802 IMPG2Q9BZV3 1241 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 CYP3A43Q9HB55 503 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 TMEM8AQ9HCN3 771 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 FAM49BQ9NUQ9 324 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 GMIPQ9P107 970 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 CFAP97Q9P2B7 532 aa17.27■□□□□ 0.36
COL9A3-208ENST00000469802 CILPO75339 1184 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 MBL2P11226 248 aaPredicted RBP17.26■□□□□ 0.35
COL9A3-208ENST00000469802 GTF2H1P32780 548 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 DHCR24Q15392 516 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 RSPO4Q2I0M5 234 aaPredicted RBP17.26■□□□□ 0.35
COL9A3-208ENST00000469802 HECTD3Q5T447 861 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 CLEC20AQ6ZU45 233 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.26■□□□□ 0.35
COL9A3-208ENST00000469802 ZC3H3Q8IXZ2 948 aaKnown RBP17.26■□□□□ 0.35
COL9A3-208ENST00000469802 ADGRG2Q8IZP9 1017 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 FAM160A2Q8N612 972 aaPredicted RBP17.26■□□□□ 0.35
COL9A3-208ENST00000469802 ENGASEQ8NFI3 743 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 WHAMMQ8TF30 809 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 ACDQ96AP0 544 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 CCDC34Q96HJ3 373 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 HNRNPABQ99729 332 aaKnown RBP17.26■□□□□ 0.35
COL9A3-208ENST00000469802 CCSER2Q9H7U1 834 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 POLR3BQ9NW08 1133 aaPredicted RBP17.26■□□□□ 0.35
COL9A3-208ENST00000469802 SLC8A2Q9UPR5 921 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 NUP205Q92621 2012 aa17.26■□□□□ 0.35
COL9A3-208ENST00000469802 MYO18AQ92614 2054 aaKnown RBP17.25■□□□□ 0.35
COL9A3-208ENST00000469802 E2F8A0AVK6 867 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 PRR5-ARHGAP8B1AHC4 643 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 HHLA1C9JL84 531 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 K7EQS6 105 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 SCAMP3O14828 347 aaKnown RBP17.25■□□□□ 0.35
COL9A3-208ENST00000469802 FAM200BP0CF97 657 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 EIF2DP41214 584 aaKnown RBP17.25■□□□□ 0.35
COL9A3-208ENST00000469802 PXNP49023 591 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-208ENST00000469802 PGFP49763 221 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 ARHGAP8P85298 464 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 SPEM2Q0P670 501 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 KRT39Q6A163 491 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 GPRIN1Q7Z2K8 1008 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 SPATA20Q8TB22 786 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 FAXDC2Q96IV6 333 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 HHIPQ96QV1 700 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 NT5C1AQ9BXI3 368 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 FBXO44Q9H4M3 255 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 PNPLA8Q9NP80 782 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.25■□□□□ 0.35
COL9A3-208ENST00000469802 TBC1D14Q9P2M4 693 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 CHORDC1Q9UHD1 332 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-208ENST00000469802 USP18Q9UMW8 372 aa17.25■□□□□ 0.35
COL9A3-208ENST00000469802 TNRC6BQ9UPQ9 1833 aaKnown RBP17.24■□□□□ 0.35
COL9A3-208ENST00000469802 RPP40O75818 363 aaKnown RBP17.24■□□□□ 0.35
COL9A3-208ENST00000469802 ADORA2BP29275 332 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 MAP3K7CLP57077 242 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 MESP2Q0VG99 397 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 DMC1Q14565 340 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 RHBDF2Q6PJF5 856 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 DGLUCYQ7Z3D6 616 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 C12orf40Q86WS4 652 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 CCDC26Q8TAB7 109 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 USP33Q8TEY7 942 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 SEMA4DQ92854 862 aa17.24■□□□□ 0.35
COL9A3-208ENST00000469802 OTUB2Q96DC9 234 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms