RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 CDY1Q9Y6F8 540 aa6.98□□□□□ -1.29
VPS41-204ENST00000413141 SLC4A7Q9Y6M7 1214 aa6.98□□□□□ -1.29
VPS41-204ENST00000413141 PLXNA3P51805 1871 aa6.98□□□□□ -1.29
VPS41-204ENST00000413141 MYO16Q9Y6X6 1858 aa6.98□□□□□ -1.29
VPS41-204ENST00000413141 WDR27A2RRH5 827 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 CTAGE15A4D2H0 777 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 PGRMC1O00264 195 aaKnown RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 TNFRSF10BO14763 440 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 ADAM12O43184 909 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 SART1O43290 800 aaKnown RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 CTIFO43310 598 aaKnown RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 CEP104O60308 925 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 ZBED1O96006 694 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 URODP06132 367 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 GLI1P08151 1106 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 CTAGE8P0CG41 777 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 PDGFRAP16234 1089 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 RPL17P18621 184 aaKnown RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 SDC4P31431 198 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 GTF2F1P35269 517 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS41-204ENST00000413141 GJC1P36383 396 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 GRIK1P39086 918 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 PTPN9P43378 593 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 NDUFV1P49821 464 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 TERF1P54274 439 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 ARPP19P56211 112 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 RWDD2BP57060 319 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 RNASE9P60153 205 aaKnown RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 ROR1Q01973 937 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 SMARCB1Q12824 385 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 GPR17Q13304 367 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 ZNF211Q13398 564 aaPredicted RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 ACAP1Q15027 740 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 C15orf59Q2T9L4 293 aaPredicted RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 CCDC14Q49A88 953 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 EFHC1Q5JVL4 640 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 LRRC38Q5VT99 294 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 KIAA1841Q6NSI8 718 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 CC2D1AQ6P1N0 951 aaPredicted RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 RNF19BQ6ZMZ0 732 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 POLNQ7Z5Q5 900 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 CTAGE6Q86UF2 777 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 CTAGE4Q8IX94 777 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 KATNAL2Q8IYT4 538 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 SCML4Q8N228 414 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 TTC9BQ8N6N2 239 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 ARFGAP1Q8N6T3 406 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 FBXO22Q8NEZ5 403 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 SPPL2BQ8TCT7 592 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 ACTRT1Q8TDG2 376 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 C2orf15Q8WU43 125 aaKnown RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 IRGQQ8WZA9 623 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 NDRG1Q92597 394 aaKnown RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 DPF3Q92784 378 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 MS4A14Q96JA4 679 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 RPGRIP1Q96KN7 1286 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 C8orf48Q96LL4 319 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 RNPC3Q96LT9 517 aaKnown RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 SLC2A13Q96QE2 648 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 RAD9AQ99638 391 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 LBHD1Q9BQE6 289 aaPredicted RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 CNPY3Q9BT09 278 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 ZBED2Q9BTP6 218 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 C11orf84Q9BUA3 381 aaPredicted RBP6.97□□□□□ -1.29
VPS41-204ENST00000413141 PLXNA4Q9HCM2 1894 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 RNF14Q9UBS8 474 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 STK39Q9UEW8 545 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS41-204ENST00000413141 PCDHB12Q9Y5F1 795 aa6.97□□□□□ -1.29
VPS41-204ENST00000413141 UQCRHLA0A096LP55 91 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 LCHNA4D1U4 455 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 YJEFN3A6XGL0 299 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 EFCAB8A8MWE9 144 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 E7ENQ6 273 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 C2CD2LO14523 706 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 TLL1O43897 1013 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 RNF8O76064 485 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 FGF18O76093 207 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 FGGP02679 453 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 LTFP02788 710 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 KRT1P04264 644 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 UQCRHP07919 91 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 USP17L7P0C7H9 530 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 HAPLN1P10915 354 aaPredicted RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 PYGMP11217 842 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 DESP17661 470 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 TFE3P19532 575 aaPredicted RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 IL1R2P27930 398 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 PCK1P35558 622 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 MATKP42679 507 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 PAFAH1B1P43034 410 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 SSR1P43307 286 aaKnown RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 GPR15P49685 360 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 YWHAZP63104 245 aaKnown RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 ITIH3Q06033 890 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 C2orf54Q08AI8 447 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 DDR2Q16832 855 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 CDO1Q16878 200 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 RAB6CQ53S08 254 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 C9orf50Q5SZB4 431 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms