RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 SLC23A3Q6PIS1 610 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 CCDC73Q6ZRK6 1079 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 PIP4P1Q86T03 277 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 DDX42Q86XP3 938 aaKnown RBP eCLIP16.37■□□□□ 0.21
CHMP3-202ENST00000393773 ETFBKMTQ8IXQ9 262 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 HMGB4Q8WW32 186 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 NUSAP1Q9BXS6 441 aaKnown RBP16.37■□□□□ 0.21
CHMP3-202ENST00000393773 ZNF518BQ9C0D4 1074 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 ELOVL4Q9GZR5 314 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 POLMQ9NP87 494 aaPredicted RBP16.37■□□□□ 0.21
CHMP3-202ENST00000393773 HSPBP1Q9NZL4 362 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 BCCIPQ9P287 314 aaKnown RBP eCLIP16.37■□□□□ 0.21
CHMP3-202ENST00000393773 PILRBQ9UKJ0 227 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 NEUROG3Q9Y4Z2 214 aa16.37■□□□□ 0.21
CHMP3-202ENST00000393773 FASNP49327 2511 aaKnown RBP16.36■□□□□ 0.21
CHMP3-202ENST00000393773 ZNF233A6NK53 670 aa16.36■□□□□ 0.21
CHMP3-202ENST00000393773 SRRM3A6NNA2 597 aaPredicted RBP16.36■□□□□ 0.21
CHMP3-202ENST00000393773 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.36■□□□□ 0.21
CHMP3-202ENST00000393773 TACC1O75410 805 aa16.36■□□□□ 0.21
CHMP3-202ENST00000393773 MBL2P11226 248 aaPredicted RBP16.36■□□□□ 0.21
CHMP3-202ENST00000393773 GRIA2P42262 883 aa16.36■□□□□ 0.21
CHMP3-202ENST00000393773 LY6G5CQ5SRR4 150 aa16.36■□□□□ 0.21
CHMP3-202ENST00000393773 FAM173BQ6P4H8 233 aa16.36■□□□□ 0.21
CHMP3-202ENST00000393773 TRAPPC11Q7Z392 1133 aa16.36■□□□□ 0.21
CHMP3-202ENST00000393773 ZCCHC14Q8WYQ9 949 aaKnown RBP16.36■□□□□ 0.21
CHMP3-202ENST00000393773 HPS3Q969F9 1004 aa16.36■□□□□ 0.21
CHMP3-202ENST00000393773 SLITRK1Q96PX8 696 aa16.36■□□□□ 0.21
CHMP3-202ENST00000393773 MMS19Q96T76 1030 aa16.36■□□□□ 0.21
CHMP3-202ENST00000393773 CIZ1Q9ULV3 898 aaPredicted RBP16.36■□□□□ 0.21
CHMP3-202ENST00000393773 R3HCC1Q9Y3T6 440 aaKnown RBP16.36■□□□□ 0.21
CHMP3-202ENST00000393773 MORC2Q9Y6X9 1032 aaPredicted RBP16.36■□□□□ 0.21
CHMP3-202ENST00000393773 E2F8A0AVK6 867 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 UPK3BL1B0FP48 263 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 UPK3BL2E5RIL1 263 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 HOXC11O43248 304 aaPredicted RBP16.35■□□□□ 0.21
CHMP3-202ENST00000393773 COCHO43405 550 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 HYAL3O43820 417 aaPredicted RBP16.35■□□□□ 0.21
CHMP3-202ENST00000393773 ABL1P00519 1130 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 PTPN1P18031 435 aaKnown RBP16.35■□□□□ 0.21
CHMP3-202ENST00000393773 ITPKAP23677 461 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 HOXD12P35452 270 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 TNFRSF4P43489 277 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 IFRD2Q12894 506 aaPredicted RBP16.35■□□□□ 0.21
CHMP3-202ENST00000393773 SEMA3BQ13214 749 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 TDRD10Q5VZ19 366 aaKnown RBP16.35■□□□□ 0.21
CHMP3-202ENST00000393773 HS2ST1Q7LGA3 356 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 CGRRF1Q99675 332 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 DUSP9Q99956 384 aaKnown RBP16.35■□□□□ 0.21
CHMP3-202ENST00000393773 B3GNT5Q9BYG0 378 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 GZF1Q9H116 711 aaPredicted RBP16.35■□□□□ 0.21
CHMP3-202ENST00000393773 SNX25Q9H3E2 840 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 FSCN3Q9NQT6 498 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 TBC1D14Q9P2M4 693 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 KLK13Q9UKR3 277 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 HCN2Q9UL51 889 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 PTPRBP23467 1997 aa16.35■□□□□ 0.21
CHMP3-202ENST00000393773 SPAARA0A1B0GVQ0 90 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 CLDN5O00501 218 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 MAP3K13O43283 966 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 CST3P01034 146 aaPredicted RBP16.34■□□□□ 0.21
CHMP3-202ENST00000393773 GABRG2P18507 467 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 GNL1P36915 607 aaPredicted RBP16.34■□□□□ 0.21
CHMP3-202ENST00000393773 DPP6P42658 865 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 SNRNP35Q16560 246 aaKnown RBP16.34■□□□□ 0.21
CHMP3-202ENST00000393773 EPM2AIP1Q7L775 607 aaPredicted RBP16.34■□□□□ 0.21
CHMP3-202ENST00000393773 CCDC65Q8IXS2 484 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 B3GALNT2Q8NCR0 500 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 PDZD8Q8NEN9 1154 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 OR6B3Q8NGW1 331 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 OVCA2Q8WZ82 227 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 OTUB2Q96DC9 234 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 SLC32A1Q9H598 525 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 CAPN10Q9HC96 672 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 CD248Q9HCU0 757 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 PLXNB3Q9ULL4 1909 aa16.34■□□□□ 0.21
CHMP3-202ENST00000393773 ADAMTS20P59510 1910 aa16.33■□□□□ 0.21
CHMP3-202ENST00000393773 CKAP5Q14008 2032 aa16.33■□□□□ 0.21
CHMP3-202ENST00000393773 EIF3DO15371 548 aaKnown RBP eCLIP16.33■□□□□ 0.2
CHMP3-202ENST00000393773 TULP3O75386 442 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 STAU1O95793 577 aaKnown RBP16.33■□□□□ 0.2
CHMP3-202ENST00000393773 CFIP05156 583 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 DLATP10515 647 aaKnown RBP16.33■□□□□ 0.2
CHMP3-202ENST00000393773 YWHAQP27348 245 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 TUBP50607 506 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 TNNC1P63316 161 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 CEBPZQ03701 1054 aaKnown RBP16.33■□□□□ 0.2
CHMP3-202ENST00000393773 GAD2Q05329 585 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 CYP24A1Q07973 514 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 CUL4AQ13619 759 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 BYSLQ13895 437 aaKnown RBP16.33■□□□□ 0.2
CHMP3-202ENST00000393773 COL9A2Q14055 689 aaPredicted RBP16.33■□□□□ 0.2
CHMP3-202ENST00000393773 PSMD6Q15008 389 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 STXBP4Q6ZWJ1 553 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 FAM35AQ86V20 835 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 MIB1Q86YT6 1006 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 NUP93Q8N1F7 819 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 ZNF513Q8N8E2 541 aaPredicted RBP16.33■□□□□ 0.2
CHMP3-202ENST00000393773 TERB1Q8NA31 727 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 FBXO32Q969P5 355 aa16.33■□□□□ 0.2
CHMP3-202ENST00000393773 WBP2Q969T9 261 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 531.9 ms