RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 GLI1P08151 1106 aa19.57■□□□□ 0.72
CLN3-204ENST00000357857 CPB1P15086 417 aa19.57■□□□□ 0.72
CLN3-204ENST00000357857 ARPP19P56211 112 aa19.57■□□□□ 0.72
CLN3-204ENST00000357857 DAOAP59103 153 aa19.57■□□□□ 0.72
CLN3-204ENST00000357857 LONRF2Q1L5Z9 754 aa19.57■□□□□ 0.72
CLN3-204ENST00000357857 C15orf59Q2T9L4 293 aaPredicted RBP19.57■□□□□ 0.72
CLN3-204ENST00000357857 PRSS55Q6UWB4 352 aaPredicted RBP19.57■□□□□ 0.72
CLN3-204ENST00000357857 FAM149B1Q96BN6 582 aa19.57■□□□□ 0.72
CLN3-204ENST00000357857 SPG21Q9NZD8 308 aa19.57■□□□□ 0.72
CLN3-204ENST00000357857 MYO16Q9Y6X6 1858 aa19.57■□□□□ 0.72
CLN3-204ENST00000357857 DAB1O75553 588 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 SOD2P04179 222 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 PCK1P35558 622 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 PTPN9P43378 593 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 HTRA4P83105 476 aaPredicted RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 SLC25A11Q02978 314 aaKnown RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 GPR17Q13304 367 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 ELF2Q15723 593 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 VSTM1Q6UX27 236 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 RSPO2Q6UXX9 243 aaPredicted RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 POLNQ7Z5Q5 900 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 EXD1Q8NHP7 514 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 RIN2Q8WYP3 895 aaPredicted RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 PIK3R5Q8WYR1 880 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 PGLYRP2Q96PD5 576 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 CHST7Q9NS84 486 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 RBM12Q9NTZ6 932 aaKnown RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 DDX56Q9NY93 547 aaKnown RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.56■□□□□ 0.72
CLN3-204ENST00000357857 CXXC1Q9P0U4 656 aaPredicted RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 MTRRQ9UBK8 725 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 ZBED1O96006 694 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 KRT7P08729 469 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 USP17L7P0C7H9 530 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 MIPP30301 263 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 MAGEA11P43364 429 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 YWHAZP63104 245 aaKnown RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 ATP11AP98196 1134 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 SMARCB1Q12824 385 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 PSMD5Q16401 504 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 CDO1Q16878 200 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 ZFYVE27Q5T4F4 411 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 SH3PXD2AQ5TCZ1 1133 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 TXNRD3NBQ6F5E7 133 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 KIAA1841Q6NSI8 718 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 SCN4BQ8IWT1 228 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 MMGT1Q8N4V1 131 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 HERVK_113Q902F9 699 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 NCAPGQ9BPX3 1015 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 ZBED2Q9BTP6 218 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 DDX23Q9BUQ8 820 aaKnown RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 HERC2P3Q9BVR0 1158 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 AAASQ9NRG9 546 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 ZMYND8Q9ULU4 1186 aaPredicted RBP19.56■□□□□ 0.72
CLN3-204ENST00000357857 BACE2Q9Y5Z0 518 aa19.56■□□□□ 0.72
CLN3-204ENST00000357857 KRIT1O00522 736 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 DYNC1I1O14576 645 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 TRIM66O15016 1216 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 ZRANB2O95218 330 aaKnown RBP eCLIP19.55■□□□□ 0.72
CLN3-204ENST00000357857 KRT1P04264 644 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 MATKP42679 507 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 ATP13A4Q4VNC1 1196 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 CCDC50Q8IVM0 306 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 DEFB106AQ8N104 65 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 SCML4Q8N228 414 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 FIBCD1Q8N539 461 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 FBXO22Q8NEZ5 403 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 FAM172AQ8WUF8 416 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 IRGQQ8WZA9 623 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 AP1M1Q9BXS5 423 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 ZWILCHQ9H900 591 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 NGRNQ9NPE2 291 aaKnown RBP19.55■□□□□ 0.72
CLN3-204ENST00000357857 USP18Q9UMW8 372 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 CDY1Q9Y6F8 540 aa19.55■□□□□ 0.72
CLN3-204ENST00000357857 MTMR11A4FU01 709 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 TRUB2O95900 331 aaKnown RBP19.54■□□□□ 0.72
CLN3-204ENST00000357857 IL1R2P27930 398 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 PPM1AP35813 382 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 SMC1AQ14683 1233 aaKnown RBP19.54■□□□□ 0.72
CLN3-204ENST00000357857 PM20D1Q6GTS8 502 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 SLC13A5Q86YT5 568 aaPredicted RBP19.54■□□□□ 0.72
CLN3-204ENST00000357857 RCOR2Q8IZ40 523 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 ATAD1Q8NBU5 361 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 SPPL2BQ8TCT7 592 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 C2orf15Q8WU43 125 aaKnown RBP19.54■□□□□ 0.72
CLN3-204ENST00000357857 RBM41Q96IZ5 413 aaKnown RBP19.54■□□□□ 0.72
CLN3-204ENST00000357857 C8orf48Q96LL4 319 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 SLC2A13Q96QE2 648 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 SLC9A7Q96T83 725 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 C11orf84Q9BUA3 381 aaPredicted RBP19.54■□□□□ 0.72
CLN3-204ENST00000357857 POPDC2Q9HBU9 364 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 KLHL11Q9NVR0 708 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 PCSK1NQ9UHG2 260 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 INSL6Q9Y581 213 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 USP3Q9Y6I4 520 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 SLC4A7Q9Y6M7 1214 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 YJEFN3A6XGL0 299 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 E7ENQ6 273 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 CCDC188H7C350 402 aa19.54■□□□□ 0.72
CLN3-204ENST00000357857 NOS2P35228 1153 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms