RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 VSNL1P62760 191 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 TLE2Q04725 743 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 C2orf54Q08AI8 447 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 KCNMA1Q12791 1236 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 ECM1Q16610 540 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 STRADAQ7RTN6 431 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 METTL3Q86U44 580 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SLC51AQ86UW1 340 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 FIBCD1Q8N539 461 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PPFIBP2Q8ND30 876 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SENP6Q9GZR1 1112 aaPredicted RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 CYP4F11Q9HBI6 524 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SPG21Q9NZD8 308 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 TRHDEQ9UKU6 1024 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PCDHA3Q9Y5H8 950 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SLC30A1Q9Y6M5 507 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 COPEO14579 308 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SYN3O14994 580 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 CTIFO43310 598 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 GNGT1P63211 74 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 ZNF177Q13360 481 aaPredicted RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PAN2Q504Q3 1202 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 ATG16L1Q676U5 607 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 ARHGAP17Q68EM7 881 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 JADE1Q6IE81 842 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 KATNAL2Q8IYT4 538 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 UBXN6Q9BZV1 441 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 KRT82Q9NSB4 513 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 RBM12Q9NTZ6 932 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PACSIN2Q9UNF0 486 aaPredicted RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 IGKV6D-21A0A0A0MT36 114 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 F5H5T6 163 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 GRAP2O75791 330 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 RGS20O76081 388 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PYGLP06737 847 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 NR2C2P49116 596 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 ZNF143P52747 638 aaPredicted RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 VCPP55072 806 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PDIA2Q13087 525 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PPIGQ13427 754 aaKnown RBP eCLIP7.14□□□□□ -1.272e-7■■□□□ 12.8
SF3B1-201ENST00000335508 MTFR1Q15390 333 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 KCNA10Q16322 511 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 RASAL3Q86YV0 1011 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 YAF2Q8IY57 180 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 CRYBG2Q8N1P7 616 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PPM1NQ8N819 430 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 B3GALNT2Q8NCR0 500 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 GDAP1Q8TB36 358 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 BSNDQ8WZ55 320 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SRPK1Q96SB4 655 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 LRRC1Q9BTT6 524 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PRKD2Q9BZL6 878 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 ZC3H7BQ9UGR2 993 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 TTC7AQ9ULT0 858 aaPredicted RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 C4BP0C0L5 1744 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 TTI1O43156 1089 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 AP5Z1O43299 807 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 CILPO75339 1184 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 GSTA1P08263 222 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SERPINF2P08697 491 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 GSTA2P09210 222 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 BRAFP15056 766 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 TYK2P29597 1187 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 HTR7P34969 479 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SPRP35270 261 aaPredicted RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 COILP38432 576 aaPredicted RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 HDAC4P56524 1084 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SLC10A6Q3KNW5 377 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 BRMS1LQ5PSV4 323 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SPOPLQ6IQ16 392 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 PLEKHA7Q6IQ23 1121 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 CAPN12Q6ZSI9 719 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SERINC5Q86VE9 423 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SLC47A2Q86VL8 602 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 NOA1Q8NC60 698 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 IFT43Q96FT9 208 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 EMILIN2Q9BXX0 1053 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 GTF2IRD1Q9UHL9 959 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 RASA4BC9J798 803 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 RASA4O43374 803 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 OPHN1O60890 802 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 CHEK2O96017 543 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 PMS2P54278 862 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 TRIP13Q15645 432 aaPredicted RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 NT5DC3Q86UY8 548 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 DDX42Q86XP3 938 aaKnown RBP eCLIP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 PPIL6Q8IXY8 311 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 TAB3Q8N5C8 712 aaPredicted RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 TTPALQ9BTX7 342 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 C2orf49Q9BVC5 232 aaPredicted RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 PLEKHA4Q9H4M7 779 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 DYRK4Q9NR20 520 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 ABCC13Q9NSE7 274 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 USP18Q9UMW8 372 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 AAR2Q9Y312 384 aaKnown RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 RWDD3Q9Y3V2 267 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 HES2Q9Y543 173 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 CASTOR2A6NHX0 329 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 F8VP50 259 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms