RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C TY1B-DR6P0C2I3 1755 aa-0.58□□□□□ -2.5
RUB1YDR139C TY1B-LR2P0C2I5 1755 aa-0.58□□□□□ -2.5
RUB1YDR139C PMD1P32634 1753 aa-0.58□□□□□ -2.5
RUB1YDR139C TY1B-JR2P47100 1755 aaKnown RBP-0.58□□□□□ -2.5
RUB1YDR139C TY1B-MR1Q04214 1755 aa-0.58□□□□□ -2.5
RUB1YDR139C TY1B-MR2Q04670 1755 aaKnown RBP-0.58□□□□□ -2.5
RUB1YDR139C TY1B-NL1Q12112 1755 aa-0.58□□□□□ -2.5
RUB1YDR139C TY1B-GR1Q12141 1755 aa-0.58□□□□□ -2.5
RUB1YDR139C TY1B-GR3Q12316 1755 aa-0.58□□□□□ -2.5
RUB1YDR139C TY1B-PLQ12414 1755 aaKnown RBP-0.58□□□□□ -2.5
RUB1YDR139C TY1B-ORQ92393 1755 aa-0.58□□□□□ -2.5
RUB1YDR139C YBR090CP38253 122 aa-0.59□□□□□ -2.5
RUB1YDR139C YBR201C-AQ2V2Q3 67 aa-0.59□□□□□ -2.5
RUB1YDR139C RPS29AP41057 56 aaKnown RBP-0.6□□□□□ -2.51
RUB1YDR139C RSM19P53733 91 aaPredicted RBP-0.6□□□□□ -2.51
RUB1YDR139C ECM12O13529 151 aa-0.61□□□□□ -2.51
RUB1YDR139C SPC1P46965 94 aa-0.61□□□□□ -2.51
RUB1YDR139C SDH6Q3E785 79 aa-0.61□□□□□ -2.51
RUB1YDR139C GEA1P47102 1408 aaPredicted RBP-0.62□□□□□ -2.51
RUB1YDR139C LHP1P33399 275 aaKnown RBP-0.62□□□□□ -2.51
RUB1YDR139C EDC1P53080 175 aaPredicted RBP-0.62□□□□□ -2.51
RUB1YDR139C NHP10Q03435 203 aa-0.62□□□□□ -2.51
RUB1YDR139C STT4P37297 1900 aa-0.62□□□□□ -2.51
RUB1YDR139C YHR214C-DP0CX93 97 aa-0.63□□□□□ -2.51
RUB1YDR139C SNU13P39990 126 aaKnown RBP-0.63□□□□□ -2.51
RUB1YDR139C ECM29P38737 1868 aa-0.63□□□□□ -2.51
RUB1YDR139C RGI1P40043 161 aaPredicted RBP-0.64□□□□□ -2.51
RUB1YDR139C BSC4P53841 131 aa-0.64□□□□□ -2.51
RUB1YDR139C YOR289WQ12012 251 aaPredicted RBP-0.64□□□□□ -2.51
RUB1YDR139C ATP18P81450 59 aa-0.65□□□□□ -2.51
RUB1YDR139C TY1B-DR5P0C2I2 1755 aa-0.65□□□□□ -2.51
RUB1YDR139C TY1B-PR1P0C2I9 1755 aaKnown RBP-0.65□□□□□ -2.51
RUB1YDR139C TY1B-JR1P47098 1755 aa-0.65□□□□□ -2.51
RUB1YDR139C TY1B-ML2Q03434 1755 aaKnown RBP-0.65□□□□□ -2.51
RUB1YDR139C TY1B-ER1Q03612 1755 aa-0.65□□□□□ -2.51
RUB1YDR139C TY1B-ER2Q03619 1755 aa-0.65□□□□□ -2.51
RUB1YDR139C TY1B-DR1Q03855 1755 aa-0.65□□□□□ -2.51
RUB1YDR139C TY1B-ML1Q04711 1755 aaKnown RBP-0.65□□□□□ -2.51
RUB1YDR139C TY1B-LR1Q12088 1755 aaKnown RBP-0.65□□□□□ -2.51
RUB1YDR139C TY1B-GR2Q12269 1755 aa-0.65□□□□□ -2.51
RUB1YDR139C TY1B-OLQ12273 1755 aa-0.65□□□□□ -2.51
RUB1YDR139C TY1B-DR3Q99231 1755 aa-0.65□□□□□ -2.51
RUB1YDR139C HMRA1P0CY11 126 aa-0.66□□□□□ -2.52
RUB1YDR139C RPS12P48589 143 aaKnown RBP-0.66□□□□□ -2.52
RUB1YDR139C TSC11P40061 1430 aa-0.66□□□□□ -2.52
RUB1YDR139C MMS1Q06211 1407 aa-0.66□□□□□ -2.52
RUB1YDR139C YBL044WP38194 122 aa-0.67□□□□□ -2.52
RUB1YDR139C YMR122W-AQ3E842 84 aa-0.67□□□□□ -2.52
RUB1YDR139C KSH1Q8TGJ3 72 aa-0.67□□□□□ -2.52
RUB1YDR139C YAL065CO13511 128 aa-0.68□□□□□ -2.52
RUB1YDR139C YCR085WP25650 117 aa-0.68□□□□□ -2.52
RUB1YDR139C NHP2P32495 156 aaPredicted RBP-0.68□□□□□ -2.52
RUB1YDR139C PDR11P40550 1411 aa-0.68□□□□□ -2.52
RUB1YDR139C YDR029WQ12111 104 aa-0.68□□□□□ -2.52
RUB1YDR139C RRT15Q3E811 62 aa-0.68□□□□□ -2.52
RUB1YDR139C REV3P14284 1504 aa-0.69□□□□□ -2.52
RUB1YDR139C YBR032WP38223 100 aa-0.69□□□□□ -2.52
RUB1YDR139C YKL068W-AQ3E826 78 aa-0.69□□□□□ -2.52
RUB1YDR139C GEA2P39993 1459 aaKnown RBP-0.69□□□□□ -2.52
RUB1YDR139C YMR001C-AQ8TGS9 76 aa-0.7□□□□□ -2.52
RUB1YDR139C RPA190P10964 1664 aaKnown RBP-0.71□□□□□ -2.52
RUB1YDR139C YPR108W-AQ3E7B3 70 aa-0.71□□□□□ -2.52
RUB1YDR139C YOL097W-AQ3E7Y9 61 aa-0.72□□□□□ -2.52
RUB1YDR139C MHF2Q3E829 80 aa-0.72□□□□□ -2.52
RUB1YDR139C MOT1P32333 1867 aa-0.73□□□□□ -2.53
RUB1YDR139C FPR2P32472 135 aa-0.73□□□□□ -2.53
RUB1YDR139C MDS3P53094 1487 aa-0.73□□□□□ -2.53
RUB1YDR139C UTP10P42945 1769 aaKnown RBP-0.74□□□□□ -2.53
RUB1YDR139C YER137CP40083 148 aaKnown RBP-0.74□□□□□ -2.53
RUB1YDR139C SUS1Q6WNK7 96 aa-0.74□□□□□ -2.53
RUB1YDR139C TY2B-LR1P0C2J3 1770 aa-0.75□□□□□ -2.53
RUB1YDR139C TY2B-FP0CX63 1770 aa-0.75□□□□□ -2.53
RUB1YDR139C TY2B-GR2P0CX64 1770 aa-0.75□□□□□ -2.53
RUB1YDR139C TY2B-CP25384 1770 aa-0.75□□□□□ -2.53
RUB1YDR139C TY2B-DR2Q03494 1770 aa-0.75□□□□□ -2.53
RUB1YDR139C TY2B-DR3Q07791 1770 aaKnown RBP-0.75□□□□□ -2.53
RUB1YDR139C TY2B-OR1Q12113 1770 aa-0.75□□□□□ -2.53
RUB1YDR139C TY2B-DR1Q12472 1770 aa-0.75□□□□□ -2.53
RUB1YDR139C TY2B-BQ12491 1770 aa-0.75□□□□□ -2.53
RUB1YDR139C TY2B-OR2Q12501 1770 aa-0.75□□□□□ -2.53
RUB1YDR139C MSL1P40567 111 aaPredicted RBP-0.75□□□□□ -2.53
RUB1YDR139C POL1P13382 1468 aa-0.75□□□□□ -2.53
RUB1YDR139C TOR1P35169 2470 aa-0.75□□□□□ -2.53
RUB1YDR139C PAU23Q07987 124 aa-0.79□□□□□ -2.54
RUB1YDR139C FYV7Q12247 151 aa-0.79□□□□□ -2.54
RUB1YDR139C PAU17Q12370 124 aa-0.79□□□□□ -2.54
RUB1YDR139C YDR042CQ03205 200 aa-0.8□□□□□ -2.54
RUB1YDR139C YDR182W-AQ3E796 67 aa-0.81□□□□□ -2.54
RUB1YDR139C XRN1P22147 1528 aaKnown RBP-0.81□□□□□ -2.54
RUB1YDR139C GDB1Q06625 1536 aa-0.82□□□□□ -2.54
RUB1YDR139C YKL018C-AQ3E7A7 99 aa-0.82□□□□□ -2.54
RUB1YDR139C YOR008C-AQ3E7B9 74 aa-0.82□□□□□ -2.54
RUB1YDR139C SCP1Q08873 200 aa-0.83□□□□□ -2.54
RUB1YDR139C NOP10Q6Q547 58 aaPredicted RBP-0.85□□□□□ -2.55
RUB1YDR139C SWR1Q05471 1514 aa-0.85□□□□□ -2.55
RUB1YDR139C YOR343CQ12484 108 aa-0.88□□□□□ -2.55
RUB1YDR139C VTH1P40438 1549 aa-0.89□□□□□ -2.55
RUB1YDR139C VTH2P40890 1549 aa-0.89□□□□□ -2.55
RUB1YDR139C YIL156W-BQ2V2P4 73 aa-0.89□□□□□ -2.55
RUB1YDR139C SPO14P36126 1683 aa-0.89□□□□□ -2.55
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms