RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 PLEKHA5Q9HAU0 1116 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 ST3GAL5Q9UNP4 418 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 L3MBTL1Q9Y468 752 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 TIMM13Q9Y5L4 95 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 PODXLO00592 558 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 TP73O15350 636 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 HMGCRP04035 888 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 CALRP27797 417 aaKnown RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 MLH1P40692 756 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 MFSD14CQ5VZR4 134 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 C12orf50Q8NA57 414 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 LRRN4Q8WUT4 740 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 GPATCH2LQ9NWQ4 482 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 KPNA7A9QM74 516 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 GABBR2O75899 941 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 CHRNA1P02708 482 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 MIPP30301 263 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 MAN1A1P33908 653 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 SLCO1A2P46721 670 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 MMRN1Q13201 1228 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 MTM1Q13496 603 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 PAN2Q504Q3 1202 aaKnown RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 HP1BP3Q5SSJ5 553 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 SCYL2Q6P3W7 929 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 KBTBD7Q8WVZ9 684 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 RXFP2Q8WXD0 754 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 CCT6BQ92526 530 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 SEC16BQ96JE7 1060 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 ZNF570Q96NI8 536 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 MTG1Q9BT17 334 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 DDX23Q9BUQ8 820 aaKnown RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 CALN1Q9BXU9 219 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 EPB41L4BQ9H329 900 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 RNF186Q9NXI6 227 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 UBQLN1Q9UMX0 589 aaKnown RBP12.25□□□□□ -0.45
SHMT2-212ENST00000554467 ZNF148Q9UQR1 794 aa12.25□□□□□ -0.45
SHMT2-212ENST00000554467 PTGESO14684 152 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 MAP3K6O95382 1288 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 IFNB1P01574 187 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 IGHA2P01877 340 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 ASGR1P07306 291 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 LCP1P13796 627 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 PDGFRAP16234 1089 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 TFE3P19532 575 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 THPOP40225 353 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 ITGA8P53708 1063 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 PMS2P54278 862 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 NRLP54845 237 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 MRPS6P82932 125 aaKnown RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 SLC25A11Q02978 314 aaKnown RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 SLC29A2Q14542 456 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 LACTB2Q53H82 288 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 THEMIS2Q5TEJ8 643 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 LCLAT1Q6UWP7 414 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 APBB1IPQ7Z5R6 666 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 CD302Q8IX05 232 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 RCOR2Q8IZ40 523 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 PEBP4Q96S96 227 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 GAD1Q99259 594 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 SELENOSQ9BQE4 189 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 AGO3Q9H9G7 860 aaKnown RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 XPNPEP3Q9NQH7 507 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 GTF2IRD1Q9UHL9 959 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 GOLGA6L7A0A1B0GV03 622 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 CLDN5O00501 218 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 TRAPPC3O43617 180 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 GNAT1P11488 350 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 PRKAR2AP13861 404 aaKnown RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 SLC8A1P32418 973 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 MAGOHP61326 146 aaKnown RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 CDC42EP1Q00587 391 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 CALCOCO2Q13137 446 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 KCNA10Q16322 511 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 PPP1R2P3Q6NXS1 205 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 SPDYE1Q8NFV5 336 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 MDM1Q8TC05 714 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 SH3GL3Q99963 347 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 PAAF1Q9BRP4 392 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 TMEM121Q9BTD3 319 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 MAGEB5Q9BZ81 275 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 NGRNQ9NPE2 291 aaKnown RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 SPATS2LQ9NUQ6 558 aaKnown RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 SLC12A6Q9UHW9 1150 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 hCG_1818297A0A087WSY0 165 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 GMNCA6NCL1 334 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 PPFIA2O75334 1257 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 UPP2O95045 317 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 ACSL3O95573 720 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 GHRP10912 638 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 GNL1P36915 607 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 CDKN2BP42772 138 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 ATXN1P54253 815 aaKnown RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 NT5DC4Q86YG4 428 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 ATL2Q8NHH9 583 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 SLC2A14Q8TDB8 520 aa12.24□□□□□ -0.45
SHMT2-212ENST00000554467 RBM41Q96IZ5 413 aaKnown RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 GPBP1L1Q9HC44 474 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-212ENST00000554467 I3L4J1 428 aa12.23□□□□□ -0.45
SHMT2-212ENST00000554467 SMNDC1O75940 238 aaKnown RBP eCLIP12.23□□□□□ -0.456e-6■□□□□ 8.8
SHMT2-212ENST00000554467 GJA9P57773 515 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms