RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 EPHB4P54760 987 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 SLC39A11Q8N1S5 342 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 COLGALT1Q8NBJ5 622 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 CLEC4CQ8WTT0 213 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 RXFP2Q8WXD0 754 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 KHSRPQ92945 711 aaKnown RBP eCLIP22.08■■□□□ 1.13
VPS28-208ENST00000527797 FUBP3Q96I24 572 aaKnown RBP eCLIP22.08■■□□□ 1.13
VPS28-208ENST00000527797 TMEM30AQ9NV96 361 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 ASNSD1Q9NWL6 643 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 C2CD4BA6NLJ0 364 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 PSTPIP1O43586 416 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 GJB5O95377 273 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 PDGFRAP16234 1089 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 MARCKSL1P49006 195 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 MRPS5P82675 430 aaKnown RBP22.07■■□□□ 1.12
VPS28-208ENST00000527797 TAF5Q15542 800 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 RAB41Q5JT25 222 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 DCAF12L1Q5VU92 463 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 ARCQ7LC44 396 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 RNF168Q8IYW5 571 aaPredicted RBP22.07■■□□□ 1.12
VPS28-208ENST00000527797 RASGEF1CQ8N431 466 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 ACTRT1Q8TDG2 376 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 TMEM169Q96HH4 297 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 ZBED2Q9BTP6 218 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 PNPLA8Q9NP80 782 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 SPG21Q9NZD8 308 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 EHD2Q9NZN4 543 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 PCDHB5Q9Y5E4 795 aa22.07■■□□□ 1.12
VPS28-208ENST00000527797 HHLA1C9JL84 531 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 CTIFO43310 598 aaKnown RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 TBC1D4O60343 1298 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 TADA3O75528 432 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 RNF8O76064 485 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 DESP17661 470 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 FLT3P36888 993 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 TAS2R40P59535 323 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 DAB2IPQ5VWQ8 1189 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 ZNF572Q7Z3I7 529 aaPredicted RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 HERVK_113Q902F9 699 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 CNPY3Q9BT09 278 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 CNGB3Q9NQW8 809 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 AAASQ9NRG9 546 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 ABI2Q9NYB9 513 aaPredicted RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 DPYSL4O14531 572 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 CPB1P15086 417 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 CYP2F1P24903 491 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 GRIK1P39086 918 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 NDUFV1P49821 464 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 RABGGTBP53611 331 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 ARPP19P56211 112 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 TUBB4BP68371 445 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 HTRA4P83105 476 aaPredicted RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 ADCY1Q08828 1119 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 SMARCB1Q12824 385 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 ZNF211Q13398 564 aaPredicted RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 CLUL1Q15846 466 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 SEL1L2Q5TEA6 688 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 LRRC38Q5VT99 294 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 KIAA1841Q6NSI8 718 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 GOLGA1Q92805 767 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 RNPC3Q96LT9 517 aaKnown RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 LBHD1Q9BQE6 289 aaPredicted RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 PLVAPQ9BX97 442 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 SMARCAL1Q9NZC9 954 aa22.06■■□□□ 1.12
VPS28-208ENST00000527797 CXXC1Q9P0U4 656 aaPredicted RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 TTC7AQ9ULT0 858 aaPredicted RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 ZMYND8Q9ULU4 1186 aaPredicted RBP22.06■■□□□ 1.12
VPS28-208ENST00000527797 PGRMC1O00264 195 aaKnown RBP22.05■■□□□ 1.12
VPS28-208ENST00000527797 SART1O43290 800 aaKnown RBP22.05■■□□□ 1.12
VPS28-208ENST00000527797 HSF2BPO75031 334 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 SOD2P04179 222 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 SDC4P31431 198 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 GPR17Q13304 367 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 HADHQ16836 314 aaKnown RBP22.05■■□□□ 1.12
VPS28-208ENST00000527797 TRNP1Q6NT89 227 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 PRSS55Q6UWB4 352 aaPredicted RBP22.05■■□□□ 1.12
VPS28-208ENST00000527797 GPRIN1Q7Z2K8 1008 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 FIBCD1Q8N539 461 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 RIN2Q8WYP3 895 aaPredicted RBP22.05■■□□□ 1.12
VPS28-208ENST00000527797 UBXN4Q92575 508 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 VN1R3Q9BXE9 311 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 ULBP1Q9BZM6 244 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 CHST7Q9NS84 486 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 INSL6Q9Y581 213 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 SLC4A7Q9Y6M7 1214 aa22.05■■□□□ 1.12
VPS28-208ENST00000527797 ALPK3Q96L96 1907 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 GLI1P08151 1106 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 PPM1AP35813 382 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 ITIH3Q06033 890 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 CCDC14Q49A88 953 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 VSTM1Q6UX27 236 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 SPATA4Q8NEY3 305 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 PHOSPHO2Q8TCD6 241 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 PIK3R5Q8WYR1 880 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 DPF3Q92784 378 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 FAM149B1Q96BN6 582 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 SLC9A7Q96T83 725 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 NAP1L3Q99457 506 aaPredicted RBP22.04■■□□□ 1.12
VPS28-208ENST00000527797 HERC2P3Q9BVR0 1158 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 PCDHB12Q9Y5F1 795 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms