RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 WSCD1Q658N2 575 aa8.78□□□□□ -1
RNF4-220ENST00000513578 TRNP1Q6NT89 227 aa8.78□□□□□ -1
RNF4-220ENST00000513578 FAM171BQ6P995 826 aa8.78□□□□□ -1
RNF4-220ENST00000513578 LRIG3Q6UXM1 1119 aa8.78□□□□□ -1
RNF4-220ENST00000513578 DSTYKQ6XUX3 929 aa8.78□□□□□ -1
RNF4-220ENST00000513578 PAQR9Q6ZVX9 377 aa8.78□□□□□ -1
RNF4-220ENST00000513578 BBS12Q6ZW61 710 aa8.78□□□□□ -1
RNF4-220ENST00000513578 ADAT2Q7Z6V5 191 aaKnown RBP8.78□□□□□ -1
RNF4-220ENST00000513578 RTN4RL1Q86UN2 441 aaPredicted RBP8.78□□□□□ -1
RNF4-220ENST00000513578 CCDC50Q8IVM0 306 aa8.78□□□□□ -1
RNF4-220ENST00000513578 FAM126BQ8IXS8 530 aa8.78□□□□□ -1
RNF4-220ENST00000513578 CCDC105Q8IYK2 499 aa8.78□□□□□ -1
RNF4-220ENST00000513578 FUKQ8N0W3 1084 aa8.78□□□□□ -1
RNF4-220ENST00000513578 EMC1Q8N766 993 aa8.78□□□□□ -1
RNF4-220ENST00000513578 BBOF1Q8ND07 529 aa8.78□□□□□ -1
RNF4-220ENST00000513578 CCHCR1Q8TD31 782 aa8.78□□□□□ -1
RNF4-220ENST00000513578 SLC2A14Q8TDB8 520 aa8.78□□□□□ -1
RNF4-220ENST00000513578 RAPGEF5Q92565 580 aa8.78□□□□□ -1
RNF4-220ENST00000513578 ART4Q93070 314 aa8.78□□□□□ -1
RNF4-220ENST00000513578 RNF25Q96BH1 459 aaPredicted RBP8.78□□□□□ -1
RNF4-220ENST00000513578 SH3GL2Q99962 352 aa8.78□□□□□ -1
RNF4-220ENST00000513578 ACBD6Q9BR61 282 aa8.78□□□□□ -1
RNF4-220ENST00000513578 TRIM51Q9BSJ1 452 aa8.78□□□□□ -1
RNF4-220ENST00000513578 DDX23Q9BUQ8 820 aaKnown RBP8.78□□□□□ -1
RNF4-220ENST00000513578 TSPYL1Q9H0U9 437 aa8.78□□□□□ -1
RNF4-220ENST00000513578 TRPV6Q9H1D0 765 aa8.78□□□□□ -1
RNF4-220ENST00000513578 PRDM16Q9HAZ2 1276 aa8.78□□□□□ -1
RNF4-220ENST00000513578 ST7Q9NRC1 585 aa8.78□□□□□ -1
RNF4-220ENST00000513578 CHST7Q9NS84 486 aa8.78□□□□□ -1
RNF4-220ENST00000513578 FAM49BQ9NUQ9 324 aa8.78□□□□□ -1
RNF4-220ENST00000513578 RNF19AQ9NV58 838 aa8.78□□□□□ -1
RNF4-220ENST00000513578 DDX43Q9NXZ2 648 aaKnown RBP8.78□□□□□ -1
RNF4-220ENST00000513578 GRHL1Q9NZI5 618 aa8.78□□□□□ -1
RNF4-220ENST00000513578 KANSL3Q9P2N6 904 aa8.78□□□□□ -1
RNF4-220ENST00000513578 OGDHLQ9ULD0 1010 aa8.78□□□□□ -1
RNF4-220ENST00000513578 USP18Q9UMW8 372 aa8.78□□□□□ -1
RNF4-220ENST00000513578 TTC3P53804 2025 aa8.78□□□□□ -1
RNF4-220ENST00000513578 FNDC1Q4ZHG4 1894 aaPredicted RBP8.77□□□□□ -1.01
RNF4-220ENST00000513578 GOLGA6BA6NDN3 693 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 AGPSO00116 658 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 TULP2O00295 520 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 LIASO43766 372 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 HSF2BPO75031 334 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 PPFIA2O75334 1257 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 FBXO21O94952 628 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 SYF2O95926 243 aaKnown RBP8.77□□□□□ -1.01
RNF4-220ENST00000513578 FAM153BP0C7A2 387 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 CCDC130P13994 396 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 IVDP26440 423 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 IL1R2P27930 398 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 OAS2P29728 719 aaKnown RBP8.77□□□□□ -1.01
RNF4-220ENST00000513578 SDC4P31431 198 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 FLT3P36888 993 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 RGS7P49802 495 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 AFF1P51825 1210 aaKnown RBP8.77□□□□□ -1.01
RNF4-220ENST00000513578 GABPB1Q06547 395 aaPredicted RBP8.77□□□□□ -1.01
RNF4-220ENST00000513578 DSC1Q08554 894 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 HLTFQ14527 1009 aaKnown RBP eCLIP8.77□□□□□ -1.01
RNF4-220ENST00000513578 FAM153CQ494X1 144 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 ATP13A4Q4VNC1 1196 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 TIGD5Q53EQ6 642 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 HSP90B2PQ58FF3 399 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 ODF2Q5BJF6 829 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 RAB41Q5JT25 222 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 CFAP58Q5T655 872 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 DAB2IPQ5VWQ8 1189 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 TXNRD3NBQ6F5E7 133 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 GLB1LQ6UWU2 654 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 ZDHHC24Q6UX98 284 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 CYP4V2Q6ZWL3 525 aaPredicted RBP8.77□□□□□ -1.01
RNF4-220ENST00000513578 LRRC8DQ7L1W4 858 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 STRADAQ7RTN6 431 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 BNIPLQ7Z465 357 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 ANKS1BQ7Z6G8 1248 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 PIGZQ86VD9 579 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 METTL23Q86XA0 190 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 DDX42Q86XP3 938 aaKnown RBP eCLIP8.77□□□□□ -1.01
RNF4-220ENST00000513578 PSTKQ8IV42 348 aaKnown RBP8.77□□□□□ -1.01
RNF4-220ENST00000513578 CCDC89Q8N998 374 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 TSEN2Q8NCE0 465 aaKnown RBP8.77□□□□□ -1.01
RNF4-220ENST00000513578 C3orf58Q8NDZ4 430 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 SLC35B2Q8TB61 432 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 MYCBPAPQ8TBZ2 947 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 C1orf54Q8WWF1 131 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 APBB2Q92870 758 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 NT5C3BQ969T7 300 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 SUSD3Q96L08 255 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 PKMYT1Q99640 499 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 SYT15Q9BQS2 421 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 B3GNT5Q9BYG0 378 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 FOXP3Q9BZS1 431 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 NEUROG2Q9H2A3 272 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 CSNK1G1Q9HCP0 422 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 CRTAC1Q9NQ79 661 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 TMEM161AQ9NX61 479 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 FAM153AQ9UHL3 310 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 PCDHB8Q9UN66 801 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 PTPN22Q9Y2R2 807 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 TRIM17Q9Y577 477 aa8.77□□□□□ -1.01
RNF4-220ENST00000513578 MICAL3Q7RTP6 2002 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms