RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 USP18Q9UMW8 372 aa15.28■□□□□ 0.04
SNRNP40-203ENST00000463988 SLC8A2Q9UPR5 921 aa15.28■□□□□ 0.04
SNRNP40-203ENST00000463988 ZDHHC9Q9Y397 364 aa15.28■□□□□ 0.04
SNRNP40-203ENST00000463988 SPTBN2O15020 2390 aa15.28■□□□□ 0.04
SNRNP40-203ENST00000463988 LEFTY2O00292 366 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 SLC9A3R1O14745 358 aaPredicted RBP15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 MAPK13O15264 365 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 FOXD2O60548 495 aaPredicted RBP15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 AKAP3O75969 853 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 VNN1O95497 513 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 OAS1P00973 400 aaKnown RBP15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 YWHAQP27348 245 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 SYKP43405 635 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 CACNA2D1P54289 1103 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 ZXDBP98169 803 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 TAF10Q12962 218 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 LPAL2Q16609 132 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 ZACNQ401N2 412 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 NUP93Q8N1F7 819 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 PDZD8Q8NEN9 1154 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 CCDC47Q96A33 483 aaKnown RBP15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 RNF38Q9H0F5 515 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 LINC00597Q9H2U6 94 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 SMYD3Q9H7B4 428 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 COMMD8Q9NX08 183 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 IL37Q9NZH6 218 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 TRAF3IP3Q9Y228 551 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 FRMD4BQ9Y2L6 1034 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 ATP6V1DQ9Y5K8 247 aa15.27■□□□□ 0.04
SNRNP40-203ENST00000463988 CLDN5O00501 218 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 CALUO43852 315 aaPredicted RBP15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 RHOBTB3O94955 611 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 CDH8P55286 799 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 ENPEPQ07075 957 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 SPEM2Q0P670 501 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 SRSF5Q13243 272 aaKnown RBP15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 CSRP2Q16527 193 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 NFIL3Q16649 462 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 SNX30Q5VWJ9 437 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 CEP68Q76N32 757 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 SYT13Q7L8C5 426 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 UNC93AQ86WB7 457 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 DDX42Q86XP3 938 aaKnown RBP eCLIP15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 TTC16Q8NEE8 873 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 GAB3Q8WWW8 586 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 LOXL4Q96JB6 756 aa15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 SCAND2PQ9GZW5 306 aaPredicted RBP15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 DMAP1Q9NPF5 467 aaPredicted RBP15.26■□□□□ 0.03
SNRNP40-203ENST00000463988 HELZP42694 1942 aaKnown RBP15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 A0A1W2PQ27 194 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 A0A1W2PQ64 194 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 A0A1W2PQD8 194 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 TNFRSF10BO14763 440 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 ASS1P00966 412 aaKnown RBP15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 NDUFA8P51970 172 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 DLG4P78352 724 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 NAIF1Q69YI7 327 aaPredicted RBP15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 PAQR9Q6ZVX9 377 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 SV2AQ7L0J3 742 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 CACNA2D4Q7Z3S7 1137 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 FAM35AQ86V20 835 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 ADGRG2Q8IZP9 1017 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 CRYBG2Q8N1P7 616 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 FAM160A2Q8N612 972 aaPredicted RBP15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 EZH1Q92800 747 aaPredicted RBP15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 ACDQ96AP0 544 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 SMARCD1Q96GM5 515 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 KCNK16Q96T55 309 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 RTKNQ9BST9 563 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 SDCBP2Q9H190 292 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 SEMA4GQ9NTN9 838 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 CDV3Q9UKY7 258 aaKnown RBP15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 CPQQ9Y646 472 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 SDK1Q7Z5N4 2213 aa15.25■□□□□ 0.03
SNRNP40-203ENST00000463988 ATG2BQ96BY7 2078 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 SPAG17Q6Q759 2223 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 FAM92AA1XBS5 289 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 RPP40O75818 363 aaKnown RBP15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 CLSTN1O94985 981 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 ABL1P00519 1130 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 HOXC13P31276 330 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 OPRD1P41143 372 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 RAP1GAPP47736 663 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 TUBP50607 506 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 ATXN1P54253 815 aaKnown RBP15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 DPYDQ12882 1025 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 C1orf220Q5T0J3 134 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 CEP135Q66GS9 1140 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 SCARA5Q6ZMJ2 495 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 INTS8Q75QN2 995 aaKnown RBP15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 FILIP1Q7Z7B0 1213 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 FUKQ8N0W3 1084 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 GUF1Q8N442 669 aaKnown RBP15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 RPLP0P6Q8NHW5 317 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 FBXO32Q969P5 355 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 DUSP9Q99956 384 aaKnown RBP15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 MED10Q9BTT4 135 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 TBC1D14Q9P2M4 693 aa15.24■□□□□ 0.03
SNRNP40-203ENST00000463988 EBF1Q9UH73 591 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms