RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 BRIP1Q9BX63 1249 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 RHOBTB2Q9BYZ6 727 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 TRIM4Q9C037 500 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 YIPF3Q9GZM5 350 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 CNOT10Q9H9A5 744 aaKnown RBP5.86□□□□□ -1.47
CLK1-202ENST00000409403 TCF7L1Q9HCS4 588 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 DNAJC28Q9NX36 388 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 BAIAP2L1Q9UHR4 511 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 ZFHX4Q86UP3 3567 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 ZMYM6O95789 1325 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 ATRXP46100 2492 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 CHD8Q9HCK8 2581 aa5.86□□□□□ -1.47
CLK1-202ENST00000409403 NFIBO00712 420 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 IFIT3O14879 490 aaKnown RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 PCDHGA12O60330 932 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PEX10O60683 326 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 SKAP2O75563 359 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 FARP2O94887 1054 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 C8BP07358 591 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 GSTA2P09210 222 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PAEPP09466 180 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 HMOX1P09601 288 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 CLEC2LP0C7M8 214 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 CYP2C8P10632 490 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 JUNBP17275 347 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 SYN1P17600 705 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 CASP14P31944 242 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 THBS2P35442 1172 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 RANBP1P43487 201 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PLCD1P51178 756 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 MXRA7P84157 204 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 UGT8Q16880 541 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 CCDC96Q2M329 555 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 TTMPQ5BVD1 217 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 CT83Q5H943 113 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 ZBTB41Q5SVQ8 909 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 ANO1Q5XXA6 986 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 NUGGCQ68CJ6 796 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 NCAPH2Q6IBW4 605 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 KIAA1841Q6NSI8 718 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 CCDC62Q6P9F0 684 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 TMC5Q6UXY8 1006 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 LIPIQ6XZB0 460 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 Q6ZUG5 572 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 FAM228AQ86W67 206 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 IFT20Q8IY31 132 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 ARHGAP18Q8N392 663 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 CPA6Q8N4T0 437 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 CFAP61Q8NHU2 1237 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 NOC3LQ8WTT2 800 aaKnown RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 JPH3Q8WXH2 748 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 PPP1R14BQ96C90 147 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 ZNF274Q96GC6 653 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 RBM41Q96IZ5 413 aaKnown RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 IFT74Q96LB3 600 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 ATP6V1G3Q96LB4 118 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 TRAPPC9Q96Q05 1148 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 NUP58Q9BVL2 599 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 GALNT8Q9NY28 637 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 RNF14Q9UBS8 474 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 ITGB1BP2Q9UKP3 347 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 HPSEQ9Y251 543 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 NFE2L3Q9Y4A8 694 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PCDHGA9Q9Y5G4 932 aaKnown RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 PCDHGA8Q9Y5G5 932 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PCDHGA7Q9Y5G6 932 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PCDHGA6Q9Y5G7 932 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PCDHGA3Q9Y5H0 932 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PCDHGA2Q9Y5H1 932 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 GMEB1Q9Y692 573 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 SALL1Q9NSC2 1324 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 COL15A1P39059 1388 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 ABCC12Q96J65 1359 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 SETXQ7Z333 2677 aaKnown RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 PRSS38A1L453 326 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 ZSCAN9O15535 394 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 RFPL1O75677 317 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PENKP01210 267 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 ALADP13716 330 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PRLRP16471 622 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 DESP17661 470 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PFKLP17858 780 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 TCP1P17987 556 aaKnown RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 CYLC1P35663 651 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 CCT2P78371 535 aaKnown RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 GOLGA8FQ08AF8 430 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 GOLGA8DPQ0D2H9 430 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 ZNF268Q14587 947 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 ITIH4Q14624 930 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 SLC39A14Q15043 492 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 RRS1Q15050 365 aaKnown RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 ACAP2Q15057 778 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 PPP1R7Q15435 360 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 CDC37Q16543 378 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 HIBCHQ6NVY1 386 aaPredicted RBP5.85□□□□□ -1.47
CLK1-202ENST00000409403 TSHZ1Q6ZSZ6 1077 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 KANSL1Q7Z3B3 1105 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 MAATS1Q7Z4T9 603 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 LCA5Q86VQ0 697 aa5.85□□□□□ -1.47
CLK1-202ENST00000409403 RNF168Q8IYW5 571 aaPredicted RBP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms